Ivo F. Sbalzarini

Orcid: 0000-0003-4414-4340

Affiliations:
  • TU Dresden, Germany
  • Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
  • ETH Zurich, Switzerland


According to our database1, Ivo F. Sbalzarini authored at least 88 papers between 2001 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
A high-order fully Lagrangian particle level-set method for dynamic surfaces.
J. Comput. Phys., 2024

Push-Forward Signed Distance Functions enable interpretable and robust continuous shape quantification.
CoRR, 2024

Proven Distributed Memory Parallelization of Particle Methods.
CoRR, 2024

Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality.
Proceedings of the Extended Abstracts of the CHI Conference on Human Factors in Computing Systems, 2024

2023
Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems.
J. Comput. Phys., October, 2023

A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds.
J. Sci. Comput., September, 2023

An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media.
J. Comput. Sci., September, 2023

Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces.
SIAM J. Sci. Comput., August, 2023

A Unifying Mathematical Definition of Particle Methods.
IEEE Open J. Comput. Soc., 2023

A Distributed Algebra System for Time Integration on Parallel Computers.
CoRR, 2023

Learning locally dominant force balances in active particle systems.
CoRR, 2023

Computational Power of Particle Methods.
CoRR, 2023

A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs.
Concurr. Comput. Pract. Exp., 2023

Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates.
Proceedings of the 16th IEEE Pacific Visualization Symposium, 2023

Parallel Compositing of Volumetric Depth Images for Interactive Visualization of Distributed Volumes at High Frame Rates.
Proceedings of the 23rd Eurographics Symposium on Parallel Graphics and Visualization, 2023

2022
Parallel Discrete Convolutions on Adaptive Particle Representations of Images.
IEEE Trans. Image Process., 2022

Inverse Dirichlet weighting enables reliable training of physics informed neural networks.
Mach. Learn. Sci. Technol., 2022

Model-based autotuning of discretization methods in numerical simulations of partial differential equations.
J. Comput. Sci., 2022

Corvo: Visualizing CellxGene Single-Cell Datasets in Virtual Reality.
CoRR, 2022

Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data.
CoRR, 2022

Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data.
CoRR, 2022

Mesh-free collocation for surface differential operators.
CoRR, 2022

Learning deterministic hydrodynamic equations from stochastic active particle dynamics.
CoRR, 2022

A C++ Library for Memory Layout and Performance Portability of Scientific Applications.
Proceedings of the Euro-Par 2022: Parallel Processing Workshops, 2022

2021
A Mathematical Definition of Particle Methods.
CoRR, 2021

STENCIL-NET: Data-driven solution-adaptive discretization of partial differential equations.
CoRR, 2021

Distributed Sparse Block Grids on GPUs.
Proceedings of the High Performance Computing - 36th International Conference, 2021

Particle-Based Segmentation Of Extended Objects On Curved Biological Membranes.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

The OpenPME Problem Solving Environment for Numerical Simulations.
Proceedings of the Computational Science - ICCS 2021, 2021

2020
Big-Data Analytics transformiert die Lebenswissenschaften.
Inform. Spektrum, 2020

Learning physically consistent mathematical models from data using group sparsity.
CoRR, 2020

Multivariate Interpolation on Unisolvent Nodes - Lifting the Curse of Dimensionality.
CoRR, 2020

A robustness measure for singular point and index estimation in discretized orientation and vector fields.
CoRR, 2020

An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM.
Proceedings of the ISAV@SC 2020: ISAV'20 In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2020

Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality.
Proceedings of the Computer Vision - ECCV 2020 Workshops, 2020

2019
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers.
Comput. Phys. Commun., 2019

Stability selection enables robust learning of partial differential equations from limited noisy data.
CoRR, 2019

scenery - Flexible Virtual Reality Visualisation on the Java VM.
CoRR, 2019

scenery: Flexible Virtual Reality Visualization on the Java VM.
Proceedings of the 30th IEEE Visualization Conference, 2019

A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations.
Proceedings of the 9th IEEE Symposium on Large Data Analysis and Visualization, 2019

2018
A Domain-Specific Language and Editor for Parallel Particle Methods.
ACM Trans. Math. Softw., 2018

2017
Curvature Filters Efficiently Reduce Certain Variational Energies.
IEEE Trans. Image Process., 2017

pSSAlib: The partial-propensity stochastic chemical network simulator.
PLoS Comput. Biol., 2017

Robust Mapping of Process Networks to Many-Core Systems using Bio-Inspired Design Centering.
Proceedings of the 20th International Workshop on Software and Compilers for Embedded Systems, 2017

2016
Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets.
Medical Image Anal., 2016

A Natural-Scene Gradient Distribution Prior and its Application in Light-Microscopy Image Processing.
IEEE J. Sel. Top. Signal Process., 2016

2015
A hybrid particle-mesh method for incompressible active polar viscous gels.
J. Comput. Phys., 2015

2014
A Pthreads Wrapper for Fortran 2003.
ACM Trans. Math. Softw., 2014

Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation.
CoRR, 2014

Gradient Distribution Priors for Biomedical Image Processing.
CoRR, 2014

An adaptive distributed resampling algorithm with non-proportional allocation.
Proceedings of the IEEE International Conference on Acoustics, 2014

Towards an FCA-based Recommender System for Black-Box Optimization.
Proceedings of the 3rd International Workshop "What can FCA do for Artificial Intelligence"? co-located with the European Conference on Artificial Intelligence (ECAI 2014), 2014

Image Enhancement by Gradient Distribution Specification.
Proceedings of the Computer Vision - ACCV 2014 Workshops, 2014

2013
A Meshless Particle Method for Poisson and Diffusion Problems with Discontinuous Coefficients and Inhomogeneous Boundary Conditions.
SIAM J. Sci. Comput., 2013

Receptor Concentration and Diffusivity Control Multivalent Binding of Sv40 to Membrane Bilayers.
PLoS Comput. Biol., 2013

A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation in 2D and 3D.
Parallel Comput., 2013

Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective.
Int. J. Comput. Vis., 2013

Balanced offline allocation of weighted balls into bins
CoRR, 2013

Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering.
CoRR, 2013

PPF - A Parallel Particle Filtering Library.
CoRR, 2013

Balancing indivisible real-valued loads in arbitrary networks.
CoRR, 2013

MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis.
BMC Bioinform., 2013

Local weighted Gaussian curvature for image processing.
Proceedings of the IEEE International Conference on Image Processing, 2013

2012
Discrete Region Competition for Unknown Numbers of Connected Regions.
IEEE Trans. Image Process., 2012

Choosing the Best Kernel: Performance Models for Diffusion Operators in Particle Methods.
SIAM J. Sci. Comput., 2012

A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations.
J. Comput. Phys., 2012

Energy Landscapes of Atomic Clusters as Black Box Optimization Benchmarks.
Evol. Comput., 2012

Fast neighbor lists for adaptive-resolution particle simulations.
Comput. Phys. Commun., 2012

Coupled signed-distance functions for implicit surface reconstruction.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors.
J. Comput. Sci., 2011

Global parameter identification of stochastic reaction networks from single trajectories
CoRR, 2011

Global Characterization of the CEC 2005 Fitness Landscapes Using Fitness-Distance Analysis.
Proceedings of the Applications of Evolutionary Computation, 2011

An alternating split Bregman algorithm for multi-region segmentation.
Proceedings of the Conference Record of the Forty Fifth Asilomar Conference on Signals, 2011

2010
Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium <i>Deinococcus radiodurans</i>.
PLoS Comput. Biol., 2010

Discretization correction of general integral PSE Operators for particle methods.
J. Comput. Phys., 2010

Abstractions and Middleware for Petascale Computing and Beyond.
Int. J. Distributed Syst. Technol., 2010

Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images.
BMC Bioinform., 2010

Gaussian Adaptation Revisited - An Entropic View on Covariance Matrix Adaptation.
Proceedings of the Applications of Evolutionary Computation, 2010

Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling.
Proceedings of the IEEE Congress on Evolutionary Computation, 2010

2009
Deconvolving Active Contours for Fluorescence Microscopy Images.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

Bayesian Image Analysis with On-Line Confidence Estimates and its Application to Microtubule Tracking.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

A Tunable Real-world Multi-funnel Benchmark Problem for Evolutionary Optimization - And Why Parallel Island Models Might Remedy the Failure of CMA-ES on It.
Proceedings of the IJCCI 2009, 2009

pCMALib: a parallel fortran 90 library for the evolution strategy with covariance matrix adaptation.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

Particle Swarm CMA Evolution Strategy for the optimization of multi-funnel landscapes.
Proceedings of the IEEE Congress on Evolutionary Computation, 2009

2006
PPM - A highly efficient parallel particle-mesh library for the simulation of continuum systems.
J. Comput. Phys., 2006

A Software Framework for the Portable Parallelization of Particle-Mesh Simulations.
Proceedings of the Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28, 2006

2001
Microchannel Optimization Using Multiobjective Evolution Strategies.
Proceedings of the Evolutionary Multi-Criterion Optimization, 2001

Evolution strategies for the optimization of microdevices.
Proceedings of the 2001 Congress on Evolutionary Computation, 2001


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