Ivan Ovcharenko

According to our database, Ivan Ovcharenko authored at least 16 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

ChromDL: a next-generation regulatory DNA classifier.

Christopher Hill, Sanjarbek Hudaiberdiev, Ivan Ovcharenko

Bioinform., 2023

2018

Enhancer reprogramming in mammalian genomes.

Mario A. Flores, Ivan Ovcharenko

BMC Bioinform., 2018

SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome.

Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko

Bioinform., 2018

2012

Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.

Hani Z. Girgis, Ivan Ovcharenko

BMC Bioinform., 2012

CLARE: Cracking the LAnguage of Regulatory Elements.

Leila Taher, Leelavati Narlikar, Ivan Ovcharenko

Bioinform., 2012

2010

Structure of Proximal and Distant Regulatory Elements in the Human Genome.

Ivan Ovcharenko

Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

2009

Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.

Leila Taher, Ivan Ovcharenko

Bioinform., 2009

2008

DiRE: identifying distant regulatory elements of co-expressed genes.

Valer Gotea, Ivan Ovcharenko

Nucleic Acids Res., 2008

2007

ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.

Gabriela G. Loots, Ivan Ovcharenko

Bioinform., 2007

2006

Array2BIO: from microarray expression data to functional annotation of co-regulated genes.

Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko

BMC Bioinform., 2006

2005

Identifying synonymous regulatory elements in vertebrate genomes.

Ivan Ovcharenko, Marcelo A. Nobrega

Nucleic Acids Res., 2005

Dcode.org anthology of comparative genomic tools.

Gabriela G. Loots, Ivan Ovcharenko

Nucleic Acids Res., 2005

2004

CREME: Cis-Regulatory Module Explorer for the human genome.

Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, Ivan Ovcharenko

Nucleic Acids Res., 2004

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.

Ivan Ovcharenko, Marcelo A. Nobrega, Gabriela G. Loots, Lisa Stubbs

Nucleic Acids Res., 2004

rVISTA 2.0: evolutionary analysis of transcription factor binding sites.

Gabriela G. Loots, Ivan Ovcharenko

Nucleic Acids Res., 2004

2003

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.

Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003