Ivan Merelli
Orcid: 0000-0003-3587-3680
According to our database1,
Ivan Merelli
authored at least 96 papers
between 2005 and 2023.
Collaborative distances:
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Bibliography
2023
<i>InCliniGene</i> enables high-throughput and comprehensive <i>in vivo</i> clonal tracking toward clinical genomics data integration.
Database J. Biol. Databases Curation, 2023
2021
Hardware and Software Solutions for Energy-Efficient Computing in Scientific Programming.
Sci. Program., 2021
Advantages of using graph databases to explore chromatin conformation capture experiments.
BMC Bioinform., 2021
Selected papers from the 15th and 16th international conference on Computational Intelligence Methods for Bioinformatics and Biostatistics.
BMC Bioinform., 2021
2020
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice.
Fundam. Informaticae, 2020
Future Gener. Comput. Syst., 2020
Concurr. Comput. Pract. Exp., 2020
Concurr. Comput. Pract. Exp., 2020
γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites.
Bioinform., 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types.
J. Parallel Distributed Comput., 2019
SoC-based computing infrastructures for scientific applications and commercial services: Performance and economic evaluations.
Future Gener. Comput. Syst., 2019
Combining Edge and Cloud computing for low-power, cost-effective metagenomics analysis.
Future Gener. Comput. Syst., 2019
GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
BMC Bioinform., 2019
Proceedings of the 27th Euromicro International Conference on Parallel, 2019
Comparing Deep and Machine Learning Approaches in Bioinformatics: A miRNA-Target Prediction Case Study.
Proceedings of the Computational Science - ICCS 2019, 2019
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019
2018
Improving eQTL Analysis Using a Machine Learning Approach for Data Integration: A Logistic Model Tree Solution.
J. Comput. Biol., 2018
Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things.
Future Gener. Comput. Syst., 2018
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP.
Complex., 2018
Proceedings of the 26th Euromicro International Conference on Parallel, 2018
Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018
Parallelizable Strategy for the Estimation of the 3D Structure of Biological Macromolecules.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018
Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018
2017
PeerJ Prepr., 2017
Int. J. High Perform. Comput. Appl., 2017
Porting bioinformatics applications from grid to cloud: A macromolecular surface analysis application case study.
Int. J. High Perform. Comput. Appl., 2017
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites.
BMC Bioinform., 2017
Implementing a Space-Aware Stochastic Simulator on Low-Power Architectures: A Systems Biology Case Study.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017
Proceedings of the 25th Euromicro International Conference on Parallel, 2017
Proceedings of the Parallel Computing is Everywhere, 2017
Proceedings of the International Conference on Computational Science, 2017
Performance and Economic Evaluations in Adopting Low Power Architectures: A Real Case Analysis.
Proceedings of the Economics of Grids, Clouds, Systems, and Services, 2017
2016
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.
BMC Bioinform., 2016
BMC Bioinform., 2016
Briefings Bioinform., 2016
Proceedings of the 24th Euromicro International Conference on Parallel, 2016
Proceedings of the 24th Euromicro International Conference on Parallel, 2016
Combining Bayesian Approaches and Evolutionary Techniques for the Inference of Breast Cancer Networks.
Proceedings of the 8th International Joint Conference on Computational Intelligence, 2016
2015
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015
NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015
2014
Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology.
Concurr. Comput. Pract. Exp., 2014
The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014
A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014
A Fine-Grained CUDA Implementation of the Multi-objective Evolutionary Approach NSGA-II: Potential Impact for Computational and Systems Biology Applications.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014
2013
Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes.
J. Bioinform. Comput. Biol., 2013
SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.
BMC Bioinform., 2013
A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems.
Proceedings of the 21st Euromicro International Conference on Parallel, 2013
2012
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations.
PLoS Comput. Biol., 2012
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
BMC Bioinform., 2012
Proceedings of the 20th Euromicro International Conference on Parallel, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Int. J. Metadata Semant. Ontologies, 2011
Briefings Bioinform., 2011
Proceedings of the 19th International Euromicro Conference on Parallel, 2011
Proceedings of the Parallel Computing Technologies - 11th International Conference, 2011
2010
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.
Nucleic Acids Res., 2010
J. Integr. Bioinform., 2010
BMC Syst. Biol., 2010
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.
BMC Bioinform., 2010
Proceedings of the 18th Euromicro Conference on Parallel, 2010
2009
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.
BMC Bioinform., 2009
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.
BMC Bioinform., 2009
Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening.
Proceedings of the 17th Euromicro International Conference on Parallel, 2009
Proceedings of the Metadata and Semantic Research - Third International Conference, 2009
Sys-Bio Gateway: a Framework of Bioinformatics Database Resources Oriented to Systems Biology.
Proceedings of the International Workshop on Portals for Life Sciences, 2009
2008
Nucleic Acids Res., 2008
Int. J. Bioinform. Res. Appl., 2008
BMC Bioinform., 2008
BMC Bioinform., 2008
Proceedings of the 16th Euromicro International Conference on Parallel, 2008
Proceedings of the Second International Conference on Complex, 2008
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
2007
A data integration approach for cell cycle analysis oriented to model simulation in systems biology.
BMC Syst. Biol., 2007
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing.
Proceedings of the Parallel Computing: Architectures, 2007
A Parallel Workflow for the Reconstruction of Molecular Surfaces.
Proceedings of the Parallel Computing: Architectures, 2007
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
2006
J. Parallel Distributed Comput., 2006
Proceedings of the Challenges and Opportunities of HealthGrids, 2006
2005
High performance workflow implementation for protein surface characterization using grid technology.
BMC Bioinform., 2005
Proceedings of the 1st International Conference on Distributed Frameworks for Multimedia Applications (DFMA 2005), 2005