Itsik Pe'er

According to our database, Itsik Pe'er authored at least 53 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Mixed-curvature decision trees and random forests.

Philippe Chlenski, Quentin Chu, Raiyan R. Khan, Antonio Khalil Moretti, Itsik Pe'er

CoRR, 2024

Mixed-Curvature Decision Trees and Random Forests.

Philippe Chlenski, Quentin Chu, Itsik Pe'er

CoRR, 2024

Variational Pseudo Marginal Methods for Jet Reconstruction in Particle Physics.

Hanming Yang, Antonio Khalil Moretti, Sebastian Macaluso, Philippe Chlenski, Christian A. Naesseth, Itsik Pe'er

CoRR, 2024

Distributional bias compromises leave-one-out cross-validation.

George I. Austin, Itsik Pe'er, Tal Korem

CoRR, 2024

Fast Hyperboloid Decision Tree Algorithms.

Philippe Chlenski, Ethan Turok, Antonio Khalil Moretti, Itsik Pe'er

Proceedings of the Twelfth International Conference on Learning Representations, 2024

2022

Special Issue: RECOMB 2022, Part 2.

Itsik Pe'er

J. Comput. Biol., 2022

Special Issue: RECOMB 2022, Part 1.

Itsik Pe'er

J. Comput. Biol., 2022

Unclonable Polymers and Their Cryptographic Applications.

Ghada Almashaqbeh, Ran Canetti, Yaniv Erlich, Jonathan Gershoni, Tal Malkin, Itsik Pe'er, Anna Roitburd-Berman, Eran Tromer

IACR Cryptol. ePrint Arch., 2022

ICLR 2022 Challenge for Computational Geometry and Topology: Design and Results.

Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Umberto Lupo, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David A. Klindt, Erik Hermansen, Melvin Vaupel, Benjamin A. Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe'er, Felix Ambellan, Martin Hanik, Esfandiar Nava-Yazdani, Christoph von Tycowicz, Nina Miolane

CoRR, 2022

ICLR 2022 Challenge for Computational Geometry & Topology: Design and Results.

Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David A. Klindt, Erik Hermansen, Melvin Vaupel, Benjamin A. Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe'er, Felix Ambellan, Martin Hanik, Esfandiar Nava-Yazdani, Christoph von Tycowicz, Nina Miolane

Proceedings of the Topological, 2022

2021

SICaRiO: short indel call filtering with boosting.

Md Shariful Islam Bhuyan, Itsik Pe'er, M. Sohel Rahman

Briefings Bioinform., 2021

variational combinatorial sequential monte carlo methods for bayesian phylogenetic inference.

Antonio Khalil Moretti, Liyi Zhang, Christian A. Naesseth, Hadiah Venner, David M. Blei, Itsik Pe'er

Proceedings of the Thirty-Seventh Conference on Uncertainty in Artificial Intelligence, 2021

A Recovery Algorithm and Pooling Designs for One-Stage Noisy Group Testing Under the Probabilistic Framework.

Yining Liu, Sachin Kadyan, Itsik Pe'er

Proceedings of the Algorithms for Computational Biology - 8th International Conference, 2021

2020

Compositional Lotka-Volterra describes microbial dynamics in the simplex.

Tyler A. Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe'er

PLoS Comput. Biol., 2020

arcasHLA: high-resolution HLA typing from RNAseq.

Rose Orenbuch, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan

Bioinform., 2020

Efficient and Accurate Inference of Microbial Trajectories from Longitudinal Count Data.

Tyler A. Joseph, Amey P. Pasarkar, Itsik Pe'er

Proceedings of the Research in Computational Molecular Biology, 2020

Variational Objectives for Markovian Dynamics with Backward Simulation.

Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Iddo Drori, Itsik Pe'er

Proceedings of the ECAI 2020 - 24th European Conference on Artificial Intelligence, 29 August-8 September 2020, Santiago de Compostela, Spain, August 29 - September 8, 2020, 2020

2019

Autoencoding Topographic Factors.

Antonio Khalil Moretti, Andrew Stirn, Gabriel Marks, Itsik Pe'er

J. Comput. Biol., 2019

Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations.

Iddo Drori, Darshan Thaker, Arjun Srivatsa, Daniel Jeong, Yueqi Wang, Linyong Nan, Fan Wu, Dimitri Leggas, Jinhao Lei, Weiyi Lu, Weilong Fu, Yuan Gao, Sashank Karri, Anand Kannan, Antonio Khalil Moretti, Mohammed AlQuraishi, Chen Keasar, Itsik Pe'er

CoRR, 2019

Particle Smoothing Variational Objectives.

Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Iddo Drori, Itsik Pe'er

CoRR, 2019

Smoothing Nonlinear Variational Objectives with Sequential Monte Carlo.

Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Itsik Pe'er

Proceedings of the Deep Generative Models for Highly Structured Data, 2019

2018

High Quality Prediction of Protein Q8 Secondary Structure by Diverse Neural Network Architectures.

Iddo Drori, Isht Dwivedi, Pranav Shrestha, Jeffrey Wan, Yueqi Wang, Yunchu He, Anthony Mazza, Hugh Krogh-Freeman, Dimitri Leggas, Kendal Sandridge, Linyong Nan, Kaveri A. Thakoor, Chinmay Joshi, Sonam Goenka, Chen Keasar, Itsik Pe'er

CoRR, 2018

Inference of Population Structure from Ancient DNA.

Tyler A. Joseph, Itsik Pe'er

Proceedings of the Research in Computational Molecular Biology, 2018

2017

Parkinson's Disease Digital Biomarker Discovery with Optimized Transitions and Inferred Markov Emissions.

Avinash Bukkittu, Baihan Lin, Trung Vu, Itsik Pe'er

CoRR, 2017

2016

Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs.

Shuo Yang, Shai Carmi, Itsik Pe'er

J. Comput. Biol., 2016

2013

Inference of historical migration rates via haplotype sharing.

Pier Francesco Palamara, Itsik Pe'er

Bioinform., 2013

MetaSeq: Privacy Preserving Meta-Analysis of Sequencing-Based Association Studies.

Angad Pal Singh, Samreen Zafer, Itsik Pe'er

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2011

HLA Type Inference via Haplotypes Identical by Descent.

Manu N. Setty, Alexander Gusev, Itsik Pe'er

J. Comput. Biol., 2011

A Hidden Markov Model for Copy Number Variant prediction from whole genome resequencing data.

Yufeng Shen, Yiwei Gu, Itsik Pe'er

BMC Bioinform., 2011

Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association.

Yufeng Shen, Ruijie Song, Itsik Pe'er

Bioinform., 2011

Workshop: Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association.

Yufeng Shen, Ruijie Song, Itsik Pe'er

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: A Hidden Markov Model for Copy Number Variant prediction from Whole genome resequencing data.

Yufeng Shen, Yiwei Gu, Itsik Pe'er

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

A parametric Bayesian method to test the association of rare variants.

Yufeng Shen, Yee Him Cheung, Shuang Wang, Itsik Pe'er

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

CONDEX: Copy number detection in exome sequences.

Arthi Ramachandran, Mariann Micsinai, Itsik Pe'er

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

Power to detect selective allelic amplification in genome-wide scans of tumor data.

Ninad Dewal, Matthew L. Freedman, Thomas LaFramboise, Itsik Pe'er

Bioinform., 2010

2009

Overlapping Pools for High Throughput Targeted Resequencing.

Snehit Prabhu, Itsik Pe'er

Proceedings of the Research in Computational Molecular Biology, 2009

2008

Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele.

Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data.

Julia Stoyanovich, Itsik Pe'er

Bioinform., 2008

2004

Incomplete Directed Perfect Phylogeny.

Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan

SIAM J. Comput., 2004

Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs.

Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er

Proceedings of the Combinatorial Pattern Matching, 15th Annual Symposium, 2004

2003

Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples.

Itsik Pe'er, Jacques S. Beckmann

Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

2002

A Structural EM Algorithm for Phylogenetic Inference.

Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko

J. Comput. Biol., 2002

On the Complexity of Positional Sequencing by Hybridization.

Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan

J. Comput. Biol., 2002

A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.

Tal Pupko, Itsik Pe'er, Masami Hasegawa, Dan Graur, Nir Friedman

Bioinform., 2002

On the Generality of Phylogenies from Incomplete Directed Characters.

Itsik Pe'er, Ron Shamir, Roded Sharan

Proceedings of the Algorithm Theory, 2002

2001

On the Complexity of Positional Sequencing by Hybridization

Piotr Berman, Amir Ben-Dor, Itsik Pe'er, Roded Sharan, Ron Shamir

Electron. Colloquium Comput. Complex., 2001

2000

An Algorithm Combining Discrete and Continuous Methods for Optical Mapping.

Richard M. Karp, Itsik Pe'er, Ron Shamir

J. Comput. Biol., 2000

Spectrum Alignment: Efficient Resequencing by Hybridization.

Itsik Pe'er, Ron Shamir

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

Incomplete Directed Perfect Phylogeny.

Itsik Pe'er, Ron Shamir, Roded Sharan

Proceedings of the Combinatorial Pattern Matching, 11th Annual Symposium, 2000

1998

The median problems for breakpoints are NP-complete

Itsik Pe'er, Ron Shamir

Electron. Colloquium Comput. Complex., 1998

1997

Satisfiability Problems on Intervals and Unit Intervals.

Itsik Pe'er, Ron Shamir

Theor. Comput. Sci., 1997

Realizing Interval Graphs with Size and Distance Constraints.

Itsik Pe'er, Ron Shamir

SIAM J. Discret. Math., 1997

1995

Interval Graphs with Side (and Size) Constraints.

Itsik Pe'er, Ron Shamir

Proceedings of the Algorithms, 1995