Itoshi Nikaido

According to our database, Itoshi Nikaido authored at least 7 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

WormTensor: a clustering method for time-series whole-brain activity data from C. elegans.

Koki Tsuyuzaki, Kentaro Yamamoto, Yu Toyoshima, Hirofumi Sato, Manami Kanamori, Takayuki Teramoto, Takeshi Ishihara, Yuichi Iino, Itoshi Nikaido

BMC Bioinform., December, 2023

Sctensor detects many-to-many cell-cell interactions from single cell RNA-sequencing data.

Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido

BMC Bioinform., December, 2023

nnTensor: An R package for non-negative matrix/tensor decomposition.

Koki Tsuyuzaki, Itoshi Nikaido

J. Open Source Softw., June, 2023

2017

Biological Systems as Heterogeneous Information Networks: A Mini-review and Perspectives.

Koki Tsuyuzaki, Itoshi Nikaido

CoRR, 2017

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation.

Hirotaka Matsumoto, Hisanori Kiryu, Chikara Furusawa, Minoru S. H. Ko, Shigeru B. H. Ko, Norio Gouda, Tetsutaro Hayashi, Itoshi Nikaido

Bioinform., 2017

2015

MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis.

Koki Tsuyuzaki, Gota Morota, Manabu Ishii, Takeru Nakazato, Satoru Miyazaki, Itoshi Nikaido

BMC Bioinform., 2015

2004

EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes.

Itoshi Nikaido, Chika Saito, Akiko Wakamoto, Yasuhiro Tomaru, Takahiro Arakawa, Yoshihide Hayashizaki, Yasushi Okazaki

Nucleic Acids Res., 2004