Ion I. Mandoiu
Orcid: 0000-0002-4818-0237
According to our database1,
Ion I. Mandoiu
authored at least 134 papers
between 1998 and 2023.
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Bibliography
2023
J. Comput. Biol., April, 2023
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
J. Comput. Biol., April, 2023
2022
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
2021
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.
J. Comput. Biol., 2021
J. Comput. Biol., 2021
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).
J. Comput. Biol., 2021
Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020).
J. Comput. Biol., 2021
TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference.
Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021
2020
Semi-supervised learning for somatic variant calling and peptide identification in personalized cancer immunotherapy.
BMC Bioinform., 2020
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020
Proceedings of the Computational Advances in Bio and Medical Sciences, 2020
2019
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Proceedings of the Computational Advances in Bio and Medical Sciences, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
QoS Multimedia Multicast Routing.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics, 2018
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics, 2018
2017
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
BMC Bioinform., 2017
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.
Bioinform., 2017
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016
2015
Metabolic Pathway Predictions for Metabolomics: A Molecular Structure Matching Approach.
J. Chem. Inf. Model., 2015
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform., 2015
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
2014
BMC Bioinform., 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
2013
Guest Editors' introduction to the special section on bioinformatics research and applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics.
J. Chem. Inf. Model., 2013
BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical Structures in Chemical Structure Space.
J. Chem. Inf. Model., 2013
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform., 2013
Optimizing pooling strategies for the massive next-generation sequencing of viral samples.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
2012
Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
Silico Biol., 2012
BMC Bioinform., 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.
BMC Bioinform., 2011
BMC Bioinform., 2011
Algorithms Mol. Biol., 2011
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
Poster: Empirical comparison of protocols for sequencing-based gene and isoform expression profiling.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2010
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010
2009
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution.
J. Comput. Biol., 2009
Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009
Proceedings of the Bioinformatics and Computational Biology, 2009
2008
IEEE ACM Trans. Comput. Biol. Bioinform., 2008
J. Comput. Biol., 2008
Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution.
Proceedings of the Comparative Genomics, International Workshop, 2008
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2007
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2007
Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks.
J. Univers. Comput. Sci., 2007
2006
Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks.
Wirel. Networks, 2006
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2006
Proceedings of the Computational Science, 2006
Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping.
Proceedings of the Computational Science, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2005
Trans. Comp. Sys. Biology, 2005
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2005
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2005
Int. J. Bioinform. Res. Appl., 2005
Algorithmica, 2005
Improved algorithms for multiplex PCR primer set selection with amplification length constraints.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005
2004
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2004
Mob. Networks Appl., 2004
Approximation Algorithms for Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints
CoRR, 2004
Proceedings of the 2004 International Symposium on Physical Design, 2004
2003
Minimum buffered routing with bounded capacitive load for slew rate and reliability control.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2003
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2003
Proceedings of the 2003 IEEE Wireless Communications and Networking, 2003
Proceedings of the Algorithms and Data Structures, 8th International Workshop, 2003
Estimation of wirelength reduction for lambda-geometry vs. manhattan placement and routing.
Proceedings of the 5th International Workshop on System-Level Interconnect Prediction (SLIP 2003), 2003
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003
Proceedings of the 21st International Conference on Computer Design (ICCD 2003), 2003
Proceedings of the 2003 International Conference on Computer-Aided Design, 2003
Proceedings of the Global Telecommunications Conference, 2003
Proceedings of the 2003 Asia and South Pacific Design Automation Conference, 2003
2002
Provably good global buffering by generalized multiterminalmulticommodity flow approximation.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2002
A primal-dual schema based approximation algorithm for the element connectivity problem.
J. Algorithms, 2002
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002
Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing.
Proceedings of the 7th Asia and South Pacific Design Automation Conference (ASP-DAC 2002), 2002
Proceedings of the Foundations of Information Technology in the Era of Networking and Mobile Computing, 2002
Auctions with Buyer Preferences.
Proceedings of the Information Systems: The e-Business Challenge, 2002
Proceedings of the 2002 IEEE/ACM International Conference on Computer-aided Design, 2002
2001
SIAM J. Discret. Math., 2001
Proceedings of the Algorithms and Data Structures, 7th International Workshop, 2001
Proceedings of the 2001 IEEE/ACM International Conference on Computer-Aided Design, 2001
Proceedings of ASP-DAC 2001, 2001
2000
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2000
A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points.
Inf. Process. Lett., 2000
Proceedings of the 2000 IEEE/ACM International Conference on Computer-Aided Design, 2000
1998
IEEE Trans. Inf. Theory, 1998