Ioannis S. Vlachos

According to our database, Ioannis S. Vlachos authored at least 17 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Prediction of disease-free survival for precision medicine using cooperative learning on multi-omic data.

Georg Hahn, Dmitry Prokopenko, Julian Hecker, Sharon Marie Lutz, Kristina Mullin, Leinal Sejour, Winston Hide, Ioannis S. Vlachos, Stacia Desantis, Rudolph E. Tanzi, Christoph Lange

Briefings Bioinform., 2024

2023

PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs.

Pourya Naderi Yeganeh, Yue Y. Teo, Dimitra Karagkouni, Yered Pita-Juárez, Sarah L. Morgan, Frank J. Slack, Ioannis S. Vlachos, Winston A. Hide

Briefings Bioinform., September, 2023

2022

DIANA-miTED: a microRNA tissue expression database.

Ioannis Kavakiotis, Athanasios Alexiou, Spyros Tastsoglou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2022

2020

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.

Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano

Bioinform., 2020

2018

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.

Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2018

2017

BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets.

Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas

BMC Bioinform., 2017

2016

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.

Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2016

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.

Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2016

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.

Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2016

2015

DIANA-miRPath v3.0: deciphering microRNA function with experimental support.

Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2015

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions.

Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2015

TarMiner: automatic extraction of miRNA targets from literature.

Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas

Proceedings of the 27th International Conference on Scientific and Statistical Database Management, 2015

2014

Smart health: A context-aware health paradigm within smart cities.

Agusti Solanas, Constantinos Patsakis, Mauro Conti, Ioannis S. Vlachos, Victoria Ramos, Francisco Falcone, Octavian Postolache, Pablo A. Pérez-Martínez, Roberto Di Pietro, Despina N. Perrea, Antoni Martínez-Ballesté

IEEE Commun. Mag., 2014

2013

BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics.

Maria D. Paraskevopoulou, Ioannis S. Vlachos, Emmanouil Athanasiadis, George M. Spyrou

Nucleic Acids Res., 2013

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.

Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2013

2012

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.

Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2012

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.

Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou

Nucleic Acids Res., 2012