Ines Thiele
Orcid: 0000-0002-8071-7110
According to our database1,
Ines Thiele
authored at least 32 papers
between 2007 and 2023.
Collaborative distances:
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Bibliography
2023
Cardinality optimization in constraint-based modelling: application to human metabolism.
Bioinform., September, 2023
2022
MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions.
Bioinform., October, 2022
Microbiome Modelling Toolbox 2.0: efficient, tractable modelling of microbiome communities.
Bioinform., 2022
2021
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism.
PLoS Comput. Biol., 2021
Nat. Comput. Sci., 2021
DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations.
Bioinform., 2021
2019
PLoS Comput. Biol., 2019
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease.
Nucleic Acids Res., 2019
Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development.
BMC Bioinform., 2019
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities.
Bioinform., 2019
2017
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.
PLoS Comput. Biol., 2017
A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines.
PLoS Comput. Biol., 2017
Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D.
J. Cheminformatics, 2017
CoRR, 2017
Bioinform., 2017
CHRR: coordinate hit-and-run with rounding for uniform sampling of constraint-based models.
Bioinform., 2017
2014
Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2.
J. Cheminformatics, 2014
2013
BMC Bioinform., 2013
2011
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.
BMC Syst. Biol., 2011
The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions.
BMC Syst. Biol., 2011
rBioNet: A COBRA toolbox extension for <i>r</i>econstructing high-quality <i>bio</i>chemical <i>net</i>works.
Bioinform., 2011
von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models.
Bioinform., 2011
2010
BMC Syst. Biol., 2010
2009
Proceedings of the Encyclopedia of Complexity and Systems Science, 2009
Genome-Scale Reconstruction of <i>Escherichia coli</i>'s Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization.
PLoS Comput. Biol., 2009
Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling.
PLoS Comput. Biol., 2009
2008
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.
BMC Syst. Biol., 2008
2007
BMC Bioinform., 2007