Indra Neil Sarkar

Orcid: 0000-0003-2054-7356

According to our database1, Indra Neil Sarkar authored at least 84 papers between 2001 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2022
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative.
J. Am. Medical Informatics Assoc., 2022

GenBank as a source to monitor and analyze Host-Microbiome data.
Bioinform., 2022

An Unsupervised Cluster Analysis of Post-COVID-19 Mental Health Outcomes and Associated Comorbidities.
Proceedings of the AMIA 2022, 2022

2021
Public Health Informatics in a Global Pandemic: In the COVID response trenches.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Clinical Note Section Detection Using a Hidden Markov Model of Unified Medical Language System Semantic Types.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
A Phylogenetic Approach to Analyze the Conservativeness of BRCA1 and BRCA2 Mutations.
Proceedings of the AMIA 2020, 2020

Coding Free-Text Chief Complaints from a Health Information Exchange: A Preliminary Study.
Proceedings of the AMIA 2020, 2020

Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures.
Proceedings of the AMIA 2020, 2020

Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data.
Proceedings of the AMIA 2020, 2020

2019
Solr-Plant: efficient extraction of plant names from text.
BMC Bioinform., 2019

Machine learning approach to literature mining for the genetics of complex diseases.
Database J. Biol. Databases Curation, 2019

Identifying Phytochemicals from Biomedical Literature Utilizing Semantic Knowledge Sources.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Racial Representation Disparity of Population-Level Genomic Sequencing Efforts.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Web-Based Visualization of MeSH-Based PubMed/MEDLINE Statistics.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

2018
Identifying natural health product and dietary supplement information within adverse event reporting systems.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Predicting the Costs of Medical Liability Using Artificial Neural Networks.
Proceedings of the AMIA 2018, 2018

Predicting Thromboembolism after Vaginal and Laparoscopic Hysterectomy in Gynecologic Oncology Patients using Machine Learning.
Proceedings of the AMIA 2018, 2018

Using Demographic Factors and Comorbidities to Develop a Predictive Model for ICU Mortality in Patients with Acute Exacerbation COPD.
Proceedings of the AMIA 2018, 2018

2017
Crossing the health IT chasm: considerations and policy recommendations to overcome current challenges and enable value-based care.
J. Am. Medical Informatics Assoc., 2017

Assessing Data Quality within Health Information Exchanges: A Case Study for Supporting Emergency Department Research.
Proceedings of the AMIA 2017, 2017

Harnessing Biomedical Natural Language Processing Tools to Identify Medicinal Plant Knowledge from Historical Texts.
Proceedings of the AMIA 2017, 2017

Comorbidity Miner: An Open Source Interactive Tool for Mining Disparate Electronic Health Data Sources.
Proceedings of the AMIA 2017, 2017

An Automated System for Categorizing Transthoracic Echocardiography Indications According to the Echocardiography Appropriate Use Criteria.
Proceedings of the AMIA 2017, 2017

2016
Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting.
J. Am. Medical Informatics Assoc., 2016

Developing new pathways into the biomedical informatics field: the AMIA High School Scholars Program.
J. Am. Medical Informatics Assoc., 2016

How to Prepare a Nursing Informatics Conference Submission.
Proceedings of the Nursing Informatics 2016 - eHealth for All: Every Level Collaboration, 2016

Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record.
Proceedings of the Summit on Clinical Research Informatics, 2016

Report from the ED-WG Frontline: Biomedical and Health Informatics Baccalaureate (BHIB) Course.
Proceedings of the AMIA 2016, 2016

Mining and Visualizing Sequential Patterns in the Electronic Health Record: A Case Study for Asthma With and Without Mental Disorders.
Proceedings of the AMIA 2016, 2016

New Pathways Into Biomedical Informatics: Educational Outreach Programs for High School Students.
Proceedings of the AMIA 2016, 2016

2015
Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships.
J. Biomed. Informatics, 2015

Multi-source development of an integrated model for family health history.
J. Am. Medical Informatics Assoc., 2015

Automated Extraction of Substance Use Information from Clinical Texts.
Proceedings of the AMIA 2015, 2015

Surveying Problem List Perceptions and Use in the Electronic Health Record.
Proceedings of the AMIA 2015, 2015

Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma.
Proceedings of the AMIA 2015, 2015

Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures.
Proceedings of the AMIA 2015, 2015

2014
Structural network analysis of biological networks for assessment of potential disease model organisms.
J. Biomed. Informatics, 2014

Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds.
J. Am. Medical Informatics Assoc., 2014

PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed.
Proceedings of the AMIA 2014, 2014

Using Arden Syntax to Identify Registry-Eligible Very Low Birth Weight Neonates from the Electronic Health Record.
Proceedings of the AMIA 2014, 2014

Examining the Use, Contents, and Quality of Free-Text Tobacco Use Documentation in the Electronic Health Record.
Proceedings of the AMIA 2014, 2014

2013
People, organizational, and leadership factors impacting informatics support for clinical and translational research.
BMC Medical Informatics Decis. Mak., 2013

Leveraging concept-based approaches to identify potential phyto-therapies.
J. Biomed. Informatics, 2013

Research and applications: Leveraging biodiversity knowledge for potential phyto-therapeutic applications.
J. Am. Medical Informatics Assoc., 2013

Bioinformatics opportunities for identification and study of medicinal plants.
Briefings Bioinform., 2013

Resolving and Standardizing Providers within Administrative Data.
Proceedings of the AMIA 2013, 2013

Development of a Comprehensive Family Health History Information Model.
Proceedings of the AMIA 2013, 2013

2012
Translating standards into practice: Experiences and lessons learned in biomedicine and health care.
J. Biomed. Informatics, 2012

A vector space model approach to identify genetically related diseases.
J. Am. Medical Informatics Assoc., 2012

The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy.
Briefings Bioinform., 2012

Determining Compound Comorbidities for Heart Failure from Hospital Discharge Data.
Proceedings of the AMIA 2012, 2012

Mining Disease Fingerprints From Within Genetic Pathways.
Proceedings of the AMIA 2012, 2012

Social and Behavioral History Information in Public Health Datasets.
Proceedings of the AMIA 2012, 2012

Characterizing the Use and Contents of Free-Text Family History Comments in the Electronic Health Record.
Proceedings of the AMIA 2012, 2012

2011
Enhancing phylogeography by improving geographical information from GenBank.
J. Biomed. Informatics, 2011

The joint summits on translational science: Crossing the translational chasm.
J. Biomed. Informatics, 2011

Selected Papers from the 2011 Summit on Translational Bioinformatics.
J. Biomed. Informatics, 2011

Translational bioinformatics: linking knowledge across biological and clinical realms.
J. Am. Medical Informatics Assoc., 2011

2010
MeSHing molecular sequences and clinical trials: A feasibility study.
J. Biomed. Informatics, 2010

Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report.
J. Am. Medical Informatics Assoc., 2010

Editorial: Bioinformatics education in the 21st century.
Briefings Bioinform., 2010

2009
Biodiversity Informatics: the emergence of a field.
BMC Bioinform., 2009

Selected proceedings of the 2009 Summit on Translational Bioinformatics.
BMC Bioinform., 2009

Selected proceedings of the First Summit on Translational Bioinformatics 2008.
BMC Bioinform., 2009

LigerCat: Using "MeSH Clouds" from Journal, Article, or Gene Citations to Facilitate the Identification of Relevant Biomedical Literature.
Proceedings of the AMIA 2009, 2009

2008
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.
BMC Bioinform., 2008

2007
uBioRSS: Tracking taxonomic literature using RSS.
Bioinform., 2007

Biodiversity informatics: organizing and linking information across the spectrum of life.
Briefings Bioinform., 2007

Session Introduction.
Proceedings of the Biocomputing 2007, 2007

2006
Phylogenetics in the modern era.
J. Biomed. Informatics, 2006

OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
Bioinform., 2006

zMedline: A Medline-Based Content Management System.
Proceedings of the AMIA 2006, 2006

Literature Based Discovery of Gene Clusters Using Phylogenetic Methods.
Proceedings of the AMIA 2006, 2006

2005
mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests.
Bioinform., 2005

GenesTrace: Phenomic Knowledge Discovery via Structured Terminology.
Proceedings of the Biocomputing 2005, 2005

2004
ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.
Bioinform., 2004

2003
Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS<sup>®</sup>$.
Proceedings of the New Navigators: from Professionals to Patients, 2003

2002
Characteristic attributes in cancer microarrays.
J. Biomed. Informatics, 2002

Implementation Brief: Desiderata for Personal Electronic Communication in Clinical Systems.
J. Am. Medical Informatics Assoc., 2002

Discovering protein similarity using natural language processing.
Proceedings of the AMIA 2002, 2002

Exploring SNOMED Using Phylogenetic Analysis Tools.
Proceedings of the AMIA 2002, 2002

An integrative model for in-silico clinical-genomics discovery science.
Proceedings of the AMIA 2002, 2002

2001
Knowledge Aggregation from Organized Sets (KAOS) Applied to Clinical Data.
Proceedings of the AMIA 2001, 2001


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