Inanç Birol
Orcid: 0000-0003-0950-7839Affiliations:
- University of British Columbia, Department of Medical Genetics, Vancouver, Canada
According to our database1,
Inanç Birol
authored at least 46 papers
between 2003 and 2022.
Collaborative distances:
Collaborative distances:
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Online presence:
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on orcid.org
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Bibliography
2022
btllib: A C++ library with Python interface for efficient genomic sequence processing.
J. Open Source Softw., November, 2022
Bioinform., October, 2022
2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
LongStitch: high-quality genome assembly correction and scaffolding using long reads.
BMC Bioinform., 2021
HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset.
Bioinform., 2021
2020
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.
Proc. Natl. Acad. Sci. USA, 2020
Bioinform., 2020
2019
ORCA: a comprehensive bioinformatics container environment for education and research.
Bioinform., 2019
2018
BMC Bioinform., 2018
BMC Bioinform., 2018
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.
Bioinform., 2018
GraphNER: Using Corpus Level Similarities and Graph Propagation for Named Entity Recognition.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018
Proceedings of the 5th IEEE/ACM International Conference on Big Data Computing Applications and Technologies, 2018
In-domain Context-aware Token Embeddings Improve Biomedical Named Entity Recognition.
Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, 2018
2017
Bioinform., 2017
Bioinform., 2017
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.
Bioinform., 2017
2016
Theoretical analysis of the Minimum Sum of Squared Similarities sampling for Nyström-based spectral clustering.
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016
Ensemble Minimum Sum of Squared Similarities sampling for Nyström-based spectral clustering.
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016
2015
BMC Bioinform., 2015
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
Sampling with Minimum Sum of Squared Similarities for Nystrom-Based Large Scale Spectral Clustering.
Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence, 2015
2014
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Bioinform., 2014
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014
2013
Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline.
BMC Bioinform., 2013
Assembling the 20 Gb white spruce (<i>Picea glauca</i>) genome from whole-genome shotgun sequencing data.
Bioinform., 2013
2012
Dissect: detection and characterization of novel structural alterations in transcribed sequences.
Bioinform., 2012
2011
Bioinform., 2011
2010
IEEE Trans Autom. Sci. Eng., 2010
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
Bioinform., 2010
2009
IEEE Trans. Vis. Comput. Graph., 2009
2008
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
2005
Comput. Chem. Eng., 2005
2003
Comput. Chem. Eng., 2003