Ilkay Altintas

Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

Improving Wildfire Simulations by Estimation of Wildfire Wind Conditions from Fire Perimeter Measurements.

[BibT_eX]

[DOI]

Li Tan

Jessica Block

Proceedings of the Computational Science - ICCS 2021, 2021

Quantum Data Hub: A Collaborative Data and Analysis Platform for Quantum Material Science.

[BibT_eX]

[DOI]

Proceedings of the Computational Science - ICCS 2021, 2021

TemPredict: A Big Data Analytical Platform for Scalable Exploration and Monitoring of Personalized Multimodal Data for COVID-19.

[BibT_eX]

[DOI]

Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

2020

Workshop 16: SNACS Scalable Networks for Advanced Computing Systems.

[BibT_eX]

[DOI]

Dorian C. Arnold

Martin Schulz

Matthew G. F. Dosanjh

Ryan E. Grant

Taylor L. Groves

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, 2020

Recursive Updates of Wildfire Perimeters Using Barrier Points and Ensemble Kalman Filtering.

[BibT_eX]

[DOI]

Abhishek Subramanian

Li Tan

Proceedings of the Computational Science - ICCS 2020, 2020

Scalable Workflow-Driven Hydrologic Analysis in HydroFrame.

[BibT_eX]

[DOI]

Proceedings of the Computational Science - ICCS 2020, 2020

NeuroKube: An Automated and Autoscaling Neuroimaging Reconstruction Framework using Cloud Native Computing and A.I.

[BibT_eX]

[DOI]

Proceedings of the 2020 IEEE International Conference on Big Data (IEEE BigData 2020), 2020

Challenges and Opportunities for Composable AI-Integrated Applications at the Digital Continuum: Keynote.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE/ACS International Conference on Computer Systems and Applications, 2020

2019

PEnBayes: A Multi-Layered Ensemble Approach for Learning Bayesian Network Structure from Big Data.

[BibT_eX]

[DOI]

Sensors, 2019

A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Enabling FAIR research in Earth Science through research objects.

[BibT_eX]

[DOI]

Andrés García-Silva

José Manuél Gómez-Pérez

Future Gener. Comput. Syst., 2019

Toward a Methodology and Framework for Workflow-Driven Team Science.

[BibT_eX]

[DOI]

Comput. Sci. Eng., 2019

Cardiac MRI Image Segmentation for Left Ventricle and Right Ventricle using Deep Learning.

[BibT_eX]

[DOI]

CoRR, 2019

Towards A Methodology and Framework for Workflow-Driven Team Science.

[BibT_eX]

[DOI]

CoRR, 2019

Workflow-Driven Distributed Machine Learning in CHASE-CI: A Cognitive Hardware and Software Ecosystem Community Infrastructure.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

PAISE 2019 Keynote Speaker.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

The Evolution of Bits and Bottlenecks in a Scientific Workflow Trying to Keep Up with Technology: Accelerating 4D Image Segmentation Applied to NASA Data.

[BibT_eX]

[DOI]

Proceedings of the 15th International Conference on eScience, 2019

Sharing and Archiving Data Science Course Projects to Support Pedagogy for Future Cohorts.

[BibT_eX]

[DOI]

Proceedings of the 15th International Conference on eScience, 2019

Understanding a Rapidly Expanding Refugee Camp Using Convolutional Neural Networks and Satellite Imagery.

[BibT_eX]

[DOI]

Proceedings of the 15th International Conference on eScience, 2019

Scaling Deep Learning-Based Analysis of High-Resolution Satellite Imagery with Distributed Processing.

[BibT_eX]

[DOI]

Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

2018

The future of scientific workflows.

[BibT_eX]

[DOI]

Ewa Deelman

Tom Peterka

Christopher D. Carothers

Kerstin Kleese van Dam

Int. J. High Perform. Comput. Appl., 2018

Ten Simple Rules for Reproducible Research in Jupyter Notebooks.

[BibT_eX]

[DOI]

CoRR, 2018

Enabling FAIR Research in Earth Science through Research Objects.

[BibT_eX]

[DOI]

CoRR, 2018

Left Ventricle Segmentation and Volume Estimation on Cardiac MRI using Deep Learning.

[BibT_eX]

[DOI]

CoRR, 2018

Scalable Detection of Rural Schools in Africa Using Convolutional Neural Networks and Satellite Imagery.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE/ACM International Conference on Utility and Cloud Computing Companion, 2018

Analytics Pipeline for Left Ventricle Segmentation and Volume Estimation on Cardiac MRI Using Deep Learning.

[BibT_eX]

[DOI]

Proceedings of the 14th IEEE International Conference on e-Science, 2018

Land Cover Classification at the Wildland Urban Interface using High-Resolution Satellite Imagery and Deep Learning.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

Deep Learning for Enhancing Fault Tolerant Capabilities of Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

2017

Biomedical Big Data Training Collaborative (BBDTC): An effort to bridge the talent gap in biomedical science and research.

[BibT_eX]

[DOI]

J. Comput. Sci., 2017

Data through the Computational Lens.

[BibT_eX]

[DOI]

Sergey V. Kovalchuk

Tesfamariam M. Abuhay

Valeria V. Krzhizhanovskaya

Michael L. Norman

Michael Harold Lees

Jack J. Dongarra

Peter M. A. Sloot

J. Comput. Sci., 2017

Modular Resource Centric Learning for Workflow Performance Prediction.

[BibT_eX]

[DOI]

CoRR, 2017

Data Hub Architecture for Smart Cities.

[BibT_eX]

[DOI]

Proceedings of the 15th ACM Conference on Embedded Network Sensor Systems, 2017

A machine learning approach for modular workflow performance prediction.

[BibT_eX]

[DOI]

Proceedings of the 12th Workshop on Workflows in Support of Large-Scale Science, 2017

Data Assimilation of Wildfires with Fuel Adjustment Factors in farsite using Ensemble Kalman Filtering<sup>*</sup>.

[BibT_eX]

[DOI]

Thayjes Srivas

Proceedings of the International Conference on Computational Science, 2017

Firemap: A Dynamic Data-Driven Predictive Wildfire Modeling and Visualization Environment.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2017

Deep Learning on Operational Facility Data Related to Large-Scale Distributed Area Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the 13th IEEE International Conference on e-Science, 2017

Research Objects for Interworkability among Global Environmental and Geophysical Data.

[BibT_eX]

[DOI]

José Manuél Gómez-Pérez

Proceedings of the 13th IEEE International Conference on e-Science, 2017

An Unsupervised Deep Learning Approach for Satellite Image Analysis with Applications in Demographic Analysis.

[BibT_eX]

[DOI]

Proceedings of the 13th IEEE International Conference on e-Science, 2017

Automated scalable detection of location-specific Santa Ana conditions from weather data using unsupervised learning.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

2016

Kepler + CometCloud: Dynamic Scientific Workflow Execution on Federated Cloud Resources.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science 2016, 2016

Wildfire Spread Prediction and Assimilation for FARSITE Using Ensemble Kalman Filtering.

[BibT_eX]

[DOI]

Thayjes Srivas

Tomàs Artés

Proceedings of the International Conference on Computational Science 2016, 2016

Integrated Machine Learning in the Kepler Scientific Workflow System.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science 2016, 2016

Natural Language Processing using Kepler Workflow System: First Steps.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science 2016, 2016

Kepler WebView: A Lightweight, Portable Framework for Constructing Real-time Web Interfaces of Scientific Workflows.

[BibT_eX]

[DOI]

Alok Singh

Proceedings of the International Conference on Computational Science 2016, 2016

Data through the Computational Lens, Preface for ICCS 2016.

[BibT_eX]

[DOI]

Valeria V. Krzhizhanovskaya

Michael Normal

Michael Lees

Jack J. Dongarra

Peter M. A. Sloot

Proceedings of the International Conference on Computational Science 2016, 2016

Leveraging large sensor streams for robust cloud control.

[BibT_eX]

[DOI]

Kerstin Kleese van Dam

Darren J. Kerbyson

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

A scalable approach for location-specific detection of Santa Ana conditions.

[BibT_eX]

[DOI]

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

Determining feature extractors for unsupervised learning on satellite images.

[BibT_eX]

[DOI]

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

2015

FlowGate: towards extensible and scalable web-based flow cytometry data analysis.

[BibT_eX]

[DOI]

Richard H. Scheuermann

Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, St. Louis, MO, USA, July 26, 2015

Towards an Integrated Cyberinfrastructure for Scalable Data-driven Monitoring, Dynamic Prediction and Resilience of Wildfires.

[BibT_eX]

[DOI]

Jessica Block

Proceedings of the International Conference on Computational Science, 2015

Big data provenance: Challenges, state of the art and opportunities.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Big Data (IEEE BigData 2015), Santa Clara, CA, USA, October 29, 2015

2014

Big Data Applications Using Workflows for Data Parallel Computing.

[BibT_eX]

[DOI]

Comput. Sci. Eng., 2014

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data.

[BibT_eX]

[DOI]

BMC Bioinform., 2014

Enhancing Smart Re-run of Kepler Scientific Workflows Based on Near Optimum Provenance Caching in Cloud.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE World Congress on Services, 2014

Workflow as a Service in the Cloud: Architecture and Scheduling Algorithms.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2014

Progress towards Automated Kepler Scientific Workflows for Computer-aided Drug Discovery and Molecular Simulations.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2014

Using Kepler for Tool Integration in Microarray Analysis Workflows.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2014

EPiK-a Workflow for Electron Tomography in Kepler.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2014

A Scalable Data Science Workflow Approach for Big Data Bayesian Network Learning.

[BibT_eX]

[DOI]

Proceedings of the 1st IEEE/ACM International Symposium on Big Data Computing, 2014

2013

Approaches to Distributed Execution of Scientific Workflows in Kepler.

[BibT_eX]

[DOI]

Isabel Campos Plasencia

Fundam. Informaticae, 2013

Workflow-driven programming paradigms for distributed analysis of biological big data.

[BibT_eX]

[DOI]

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012

A Framework for Distributed Data-Parallel Execution in the Kepler Scientific Workflow System.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2012

Early Cloud Experiences with the Kepler Scientific Workflow System.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2012

Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository.

[BibT_eX]

[DOI]

Timothy M. McPhillips

Shawn Bowers

Michael Agun

Int. J. Digit. Curation, 2012

MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Challenges and approaches for distributed workflow-driven analysis of large-scale biological data: vision paper.

[BibT_eX]

[DOI]

Proceedings of the 2012 Joint EDBT/ICDT Workshops, Berlin, Germany, March 30, 2012, 2012

2011

Facilitating e-Science Discovery Using Scientific Workflows on the Grid.

[BibT_eX]

[DOI]

Proceedings of the Guide to e-Science, Next Generation Scientific Research and Discovery, 2011

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2011

A Data Model for Analyzing User Collaborations in Workflow-Driven e-Science.

[BibT_eX]

Int. J. Comput. Their Appl., 2011

A Physical and Virtual Compute Cluster Resource Load Balancing Approach to Data-Parallel Scientific Workflow Scheduling.

[BibT_eX]

[DOI]

Prakashan Korambath

Proceedings of the World Congress on Services, 2011

Provenance for MapReduce-based data-intensive workflows.

[BibT_eX]

[DOI]

Proceedings of the WORKS'11, 2011

Case Study on the Use of REST Architectural Principles for Scientific Analysis: CAMERA - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis.

[BibT_eX]

[DOI]

Proceedings of the REST: From Research to Practice, 2011

2010

Theoretical enzyme design using the Kepler scientific workflows on the Grid.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2010

Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis.

[BibT_eX]

[DOI]

Ecol. Informatics, 2010

A Fault-Tolerance Architecture for Kepler-Based Distributed Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the Scientific and Statistical Database Management, 2010

Fault-Tolerance in Dataflow-Based Scientific Workflow Management.

[BibT_eX]

[DOI]

Proceedings of the 6th World Congress on Services, 2010

CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the 6th World Congress on Services, 2010

Approaches for Exploring and Querying Scientific Workflow Provenance Graphs.

[BibT_eX]

[DOI]

Proceedings of the Provenance and Annotation of Data and Processes, 2010

Understanding Collaborative Studies through Interoperable Workflow Provenance.

[BibT_eX]

[DOI]

Proceedings of the Provenance and Annotation of Data and Processes, 2010

Monitoring data quality in Kepler.

[BibT_eX]

[DOI]

Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010

2009

Heterogeneous composition of models of computation.

[BibT_eX]

[DOI]

Antoon Goderis

Christopher X. Brooks

Edward A. Lee

Carole A. Goble

Future Gener. Comput. Syst., 2009

Accelerating Parameter Sweep Workflows by Utilizing Ad-hoc Network Computing Resources: An Ecological Example.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE Congress on Services, Part I, 2009

Kepler + Hadoop: a general architecture facilitating data-intensive applications in scientific workflow systems.

[BibT_eX]

[DOI]

Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science, 2009

Scientific Process Automation and Workflow Management.

[BibT_eX]

[DOI]

Timothy M. McPhillips

Proceedings of the Scientific Data Management - Challenges, Technology, and Deployment., 2009

2008

Special Issue: The First Provenance Challenge.

[BibT_eX]

[DOI]

Concurr. Comput. Pract. Exp., 2008

From computation models to models of provenance: the RWS approach.

[BibT_eX]

[DOI]

Timothy M. McPhillips

Concurr. Comput. Pract. Exp., 2008

Lifecycle of Scientific Workflows and their Provenance: A Usage Perspective.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE Congress on Services, Part I, 2008

Nimrod/K: towards massively parallel dynamic grid workflows.

[BibT_eX]

[DOI]

David Abramson

Colin Enticott

Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

A Provenance-Based Fault Tolerance Mechanism for Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the Provenance and Annotation of Data and Processes, 2008

A High-Level Distributed Execution Framework for Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the Fourth International Conference on e-Science, 2008

2007

Composing Different Models of Computation in Kepler and Ptolemy II.

[BibT_eX]

[DOI]

Antoon Goderis

Christopher X. Brooks

Edward A. Lee

Carole A. Goble

Proceedings of the Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27, 2007

2006

A three tier architecture applied to LiDAR processing and monitoring.

[BibT_eX]

[DOI]

Efrat Jaeger-Frank

Christopher J. Crosby

Sci. Program., 2006

Scientific workflow management and the Kepler system.

[BibT_eX]

[DOI]

Concurr. Comput. Pract. Exp., 2006

From Molecule to Man: Decision Support in Individualized E-Health.

[BibT_eX]

[DOI]

Computer, 2006

S04 - Introduction to scientific workflow management and the Kepler system.

[BibT_eX]

[DOI]

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Provenance Collection Support in the Kepler Scientific Workflow System.

[BibT_eX]

[DOI]

Oscar Barney

Efrat Jaeger-Frank

Proceedings of the Provenance and Annotation of Data, 2006

Automation of Network-Based Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the Grid-Based Problem Solving Environments, 2006

Scientific Workflow Infrastructure for Computational Chemistry on the Grid.

[BibT_eX]

[DOI]

Wibke Sudholt

Kim K. Baldridge

Proceedings of the Computational Science, 2006

A Three Tier Architecture for LiDAR Interpolation and Analysis.

[BibT_eX]

[DOI]

Efrat Jaeger-Frank

Christopher J. Crosby

Proceedings of the Computational Science, 2006

Integrating Data Grid and Web Services for E-Science Applications: A Case Study of Exploring Species Distributions.

[BibT_eX]

[DOI]

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

2005

The Computational Chemistry Prototyping Environment.

[BibT_eX]

[DOI]

Proc. IEEE, 2005

A Scientific Workflow Approach to Distributed Geospatial Data Processing using Web Services.

[BibT_eX]

Proceedings of the 17th International Conference on Scientific and Statistical Database Management, 2005

Flexible IO Services in the Kepler Grid Workflow System.

[BibT_eX]

[DOI]

David Abramson

Jagan Kommineni

Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005

2004

Kepler: An Extensible System for Design and Execution of Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM 2004), 2004

A Framework for the Design and Reuse of Grid Workflows.

[BibT_eX]

[DOI]

Proceedings of the Scientific Applications of Grid Computing, First International Workshop, 2004

A Web Service Composition and Deployment Framework for Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Web Services (ICWS'04), 2004

2003

Compiling Abstract Scientific Workflows into Web Service Workflows.

[BibT_eX]

[DOI]

Bertram Ludäscher

Amarnath Gupta

Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003

A Modeling and Execution Environment for Distributed Scientific Workflows.

[BibT_eX]

[DOI]

Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003

2002

Time to Leave the Trees: From Syntactic to Conceptual Querying of XML.

[BibT_eX]

[DOI]

Bertram Ludäscher