Ilias Tagkopoulos

According to our database, Ilias Tagkopoulos authored at least 29 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Predicting clinical trial success for Clostridium difficile infections based on preclinical data.

Fangzhou Li, Jason Youn, Christian Millsop, Ilias Tagkopoulos

Frontiers Artif. Intell., 2024

Interpreting Inflammation Prediction Model via Tag-based Cohort Explanation.

Fanyu Meng, Jules Larke, Xin Liu, Zhaodan Kong, Xin Chen, Danielle G. Lemay, Ilias Tagkopoulos

CoRR, 2024

FoodAtlas: Automated knowledge extraction of food and chemicals from literature.

Jason Youn, Fangzhou Li, Gabriel Simmons, Shanghyeon Kim, Ilias Tagkopoulos

Comput. Biol. Medicine, 2024

The AIFS Institute: Building a better food system through AI.

Ilias Tagkopoulos, J. Mason Earles, Danielle G. Lemay, Xin Liu, Nitin Nitin, Aaron D. Smith, Tarek I. Zohdi, Stephen F. Brown

AI Mag., 2024

2023

Semi-Automated Construction of Food Composition Knowledge Base.

Jason Youn, Fangzhou Li, Ilias Tagkopoulos

CoRR, 2023

KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction.

Jason Youn, Ilias Tagkopoulos

Proceedings of the The 12th Joint Conference on Lexical and Computational Semantics, 2023

2022

Algorithmic lifestyle optimization.

Ameen Eetemadi, Ilias Tagkopoulos

J. Am. Medical Informatics Assoc., 2022

Special report: AI Institute for next generation food systems (AIFS).

Ilias Tagkopoulos, Stephen F. Brown, Xin Liu, Qing Zhao, Tarek I. Zohdi, J. Mason Earles, Nitin Nitin, Daniel E. Runcie, Danielle G. Lemay, Aaron D. Smith, Pamela C. Ronald, Hao Feng, Gabriel David Youtsey

Comput. Electron. Agric., 2022

2020

Using Word Embeddings to Learn a Better Food Ontology.

Jason Youn, Tarini Naravane, Ilias Tagkopoulos

Frontiers Artif. Intell., 2020

BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach.

Albara Ah Ramli, Rex Liu, Rahul Krishnamoorthy, Vishal I B, Xiaoxiao Wang, Ilias Tagkopoulos, Xin Liu

Proceedings of the Internet of Things - ICIOT 2020, 2020

2019

Genetic Neural Networks: an artificial neural network architecture for capturing gene expression relationships.

Ameen Eetemadi, Ilias Tagkopoulos

Bioinform., 2019

2017

DeepPep: Deep proteome inference from peptide profiles.

Minseung Kim, Ameen Eetemadi, Ilias Tagkopoulos

PLoS Comput. Biol., 2017

2015

Microbial Forensics: Predicting Phenotypic Characteristics and Environmental Conditions from Large-Scale Gene Expression Profiles.

Minseung Kim, Violeta Zorraquino, Ilias Tagkopoulos

PLoS Comput. Biol., 2015

A Distribution Adaptive Framework for Prediction Interval Estimation Using Nominal Variables.

Ameen Eetemadi, Ilias Tagkopoulos

CoRR, 2015

2014

From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system.

Eren Gultepe, Jeffrey P. Green, Hien Nguyen, Jason Adams, Timothy E. Albertson, Ilias Tagkopoulos

J. Am. Medical Informatics Assoc., 2014

A systems biology analysis of brain microvascular endothelial cell lipotoxicity.

Hnin H. Aung, Athanasios Tsoukalas, John C. Rutledge, Ilias Tagkopoulos

BMC Syst. Biol., 2014

2013

A flood-based information flow analysis and network minimization method for gene regulatory networks.

Andreas Pavlogiannis, Vadim Mozhayskiy, Ilias Tagkopoulos

BMC Bioinform., 2013

2012

Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution.

Vadim Mozhayskiy, Ilias Tagkopoulos

BMC Bioinform., 2012

Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation.

Vadim Mozhayskiy, Ilias Tagkopoulos

BMC Bioinform., 2012

A robust, library-based, optimization-driven method for automatic gene circuit design.

Linh Hunyh, Ilias Tagkopoulos

Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system.

Eren Gultepe, Hien Nguyen, Timothy E. Albertson, Ilias Tagkopoulos

Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2011

A scalable multi-scale framework for parallel simulation and visualization of microbial evolution.

Vadim Mozhayskiy, Bob Miller, Kwan-Liu Ma, Ilias Tagkopoulos

Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery, 2011

<i>In Silico</i> Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer.

Vadim Mozhayskiy, Ilias Tagkopoulos

Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

EVEVis: A multi-scale visualization system for dense evolutionary data.

Robert Miller, Vadim Mozhayskiy, Ilias Tagkopoulos, Kwan-Liu Ma

Proceedings of the 2011 IEEE Symposium on Biological Data Visualization, 2011

2006

Symmetric and Asymmetric Multi-modality Biclustering Analysis for Microarray Data Matrix.

Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos

J. Bioinform. Comput. Biol., 2006

2005

Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data.

Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

A Transcriptional Approach to Gene Clustering.

Ilias Tagkopoulos

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks.

Ilias Tagkopoulos, Nikolai Slavov, Sun-Yuan Kung

Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2003

A custom FPGA for the simulation of gene regulatory networks.

Ilias Tagkopoulos, Charles A. Zukowski, German Cavelier, Dimitris Anastassiou

Proceedings of the 13th ACM Great Lakes Symposium on VLSI 2003, 2003