Idoia Ochoa

According to our database, Idoia Ochoa authored at least 39 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

EMVC-2: an efficient single-nucleotide variant caller based on expectation maximization.

Guillermo Dufort y Álvarez, Martí Xargay-Ferrer, Alba Pagès-Zamora, Idoia Ochoa

Bioinform., March, 2024

2023

Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.

Leah L. Weber, Chuanyi Zhang, Idoia Ochoa, Mohammed El-Kebir

PLoS Comput. Biol., October, 2023

Towards a more inductive world for drug repurposing approaches.

Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez

CoRR, 2023

2022

Unsupervised ensemble learning for genome sequencing.

Alba Pagès-Zamora, Idoia Ochoa, Gonzalo Ruiz Cavero, Pol Villalvilla-Ornat

Pattern Recognit., 2022

JIND: joint integration and discrimination for automated single-cell annotation.

Mohit Goyal, Guillermo Serrano, Josepmaria Argemi, Ilan Shomorony, Mikel Hernaez, Idoia Ochoa

Bioinform., 2022

2021

mspack: efficient lossless and lossy mass spectrometry data compression.

Felix Hanau, Hannes L. Röst, Idoia Ochoa

Bioinform., 2021

RENANO: a REference-based compressor for NANOpore FASTQ files.

Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich, José Sotelo-Silveira, Idoia Ochoa, Álvaro Martín

Bioinform., 2021

DZip: improved general-purpose loss less compression based on novel neural network modeling.

Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa

Proceedings of the 31st Data Compression Conference, 2021

2020

CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores.

Albert No, Mikel Hernaez, Idoia Ochoa

J. Bioinform. Comput. Biol., 2020

VEF: a variant filtering tool based on ensemble methods.

Chuanyi Zhang, Idoia Ochoa

Bioinform., 2020

GABAC: an arithmetic coding solution for genomic data.

Jan Voges, Tom Paridaens, Fabian Müntefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier, Jörn Ostermann, Mikel Hernaez

Bioinform., 2020

GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form.

Qingxi Meng, Idoia Ochoa, Mikel Hernaez

Bioinform., 2020

ENANO: Encoder for NANOpore FASTQ files.

Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich, José Sotelo, Idoia Ochoa, Álvaro Martín, Inanç Birol

Bioinform., 2020

DZip: Improved General-Purpose Lossless Compression Based on Novel Neural Network Modeling.

Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa

Proceedings of the Data Compression Conference, 2020

2019

MassComp, a lossless compressor for mass spectrometry data.

Ruochen Yang, Xi Chen, Idoia Ochoa

BMC Bioinform., 2019

SPRING: a next-generation compressor for FASTQ data.

Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

Bioinform., 2019

Compression of Nanopore FASTQ Files.

Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich, José Sotelo, Idoia Ochoa, Álvaro Martín

Proceedings of the Bioinformatics and Biomedical Engineering, 2019

AliCo: A New Efficient Representation for SAM Files.

Idoia Ochoa, Hongyi Li, Florian Baumgarte, Charles Hergenrother, Jan Voges, Mikel Hernaez

Proceedings of the Data Compression Conference, 2019

DeepZip: Lossless Data Compression Using Recurrent Neural Networks.

Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa

Proceedings of the Data Compression Conference, 2019

2018

FaStore: a space-saving solution for raw sequencing data.

Lukasz Roguski, Idoia Ochoa, Mikel Hernaez, Sebastian Deorowicz

Bioinform., 2018

METHCOMP: a special purpose compression platform for DNA methylation data.

Jianhao Peng, Olgica Milenkovic, Idoia Ochoa

Bioinform., 2018

QVZ: lossy compression of quality values.

Greg Malysa, Mikel Hernaez, Idoia Ochoa, Milind Rao, Karthik Ganesan, Tsachy Weissman

Bioinform., 2018

2017

Effect of lossy compression of quality scores on variant calling.

Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley

Briefings Bioinform., 2017

GeneComp, a New Reference-Based Compressor for SAM Files.

Reggy Long, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman

Proceedings of the 2017 Data Compression Conference, 2017

2016

GTRAC: fast retrieval from compressed collections of genomic variants.

Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa, Tsachy Weissman

Bioinform., 2016

Comment on: 'ERGC: an efficient referential genome compression algorithm'.

Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

Bioinform., 2016

CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores.

Idoia Ochoa, Albert No, Mikel Hernaez, Tsachy Weissman

Proceedings of the 2016 IEEE Information Theory Workshop, 2016

Denoising of Quality Scores for Boosted Inference and Reduced Storage.

Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley

Proceedings of the 2016 Data Compression Conference, 2016

A Cluster-Based Approach to Compression of Quality Scores.

Mikel Hernaez, Idoia Ochoa, Tsachy Weissman

Proceedings of the 2016 Data Compression Conference, 2016

2015

iDoComp: a compression scheme for assembled genomes.

Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

Bioinform., 2015

2014

Aligned genomic data compression via improved modeling.

Idoia Ochoa, Mikel Hernaez, Tsachy Weissman

J. Bioinform. Comput. Biol., 2014

Compression Schemes for Similarity Queries.

Idoia Ochoa, Amir Ingber, Tsachy Weissman

Proceedings of the Data Compression Conference, 2014

2013

QualComp: a new lossy compressor for quality scores based on rate distortion theory.

Idoia Ochoa, Himanshu Asnani, Dinesh Bharadia, Mainak Chowdhury, Tsachy Weissman, Golan Yona

BMC Bioinform., 2013

Efficient similarity queries via lossy compression.

Idoia Ochoa, Amir Ingber, Tsachy Weissman

Proceedings of the 51st Annual Allerton Conference on Communication, 2013

2012

Lossy Compression of Quality Values via Rate Distortion Theory

Himanshu Asnani, Dinesh Bharadia, Mainak Chowdhury, Idoia Ochoa, Itai Sharon, Tsachy Weissman

CoRR, 2012

Reference based genome compression.

Bobbie Chern, Idoia Ochoa, Alexandros Manolakos, Albert No, Kartik Venkat, Tsachy Weissman

Proceedings of the 2012 IEEE Information Theory Workshop, 2012

2010

Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime.

Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez

IEEE Commun. Lett., 2010

LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation.

Idoia Ochoa, Pedro M. Crespo, Mikel Hernaez

IEEE Commun. Lett., 2010

Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime.

Idoia Ochoa, Pedro M. Crespo, Javier Del Ser, Mikel Hernaez

Proceedings of the Mobile Lightweight Wireless Systems, 2010