Ibrahim Numanagic

According to our database, Ibrahim Numanagic authored at least 14 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Diagnostics of viral infections using high-throughput genome sequencing data.

Haochen Ning, Ian Boyes, Ibrahim Numanagic, Michael Rott, Li Xing, Xuekui Zhang

Briefings Bioinform., 2024

2023

Codon: A Compiler for High-Performance Pythonic Applications and DSLs.

Ariya Shajii, Gabriel Ramirez, Haris Smajlovic, Jessica Ray, Bonnie Berger, Saman P. Amarasinghe, Ibrahim Numanagic

Proceedings of the 32nd ACM SIGPLAN International Conference on Compiler Construction, 2023

2022

Fast characterization of segmental duplication structure in multiple genome assemblies.

Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic

Algorithms Mol. Biol., 2022

Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines.

Haris Smajlovic, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagic

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022

2021

BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies.

Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic

Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021

2019

Genomic Data Compression.

Kaiyuan Zhu, Ibrahim Numanagic, Süleyman Cenk Sahinalp

Proceedings of the Encyclopedia of Big Data Technologies., 2019

Seq: a high-performance language for bioinformatics.

Ariya Shajii, Ibrahim Numanagic, Riyadh Baghdadi, Bonnie Berger, Saman P. Amarasinghe

Proc. ACM Program. Lang., 2019

2018

Fast characterization of segmental duplications in genome assemblies.

Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach

Bioinform., 2018

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp

Bioinform., 2018

Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream Analyses.

Ariya Shajii, Ibrahim Numanagic, Bonnie Berger

Proceedings of the Research in Computational Molecular Biology, 2018

2017

Discovery and genotyping of novel sequence insertions in many sequenced individuals.

Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach

Bioinform., 2017

2015

Cypiripi: exact genotyping of <i>CYP2D6</i> using high-throughput sequencing data.

Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp

Bioinform., 2015

2014

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2014

2012

SCALCE: boosting sequence compression algorithms using locally consistent encoding.

Faraz Hach, Ibrahim Numanagic, Can Alkan, Süleyman Cenk Sahinalp

Bioinform., 2012