I-Min A. Chen

According to our database, I-Min A. Chen authored at least 43 papers between 1989 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.

Supratim Mukherjee, Dimitri Stamatis, Cindy Tianqing Li, Galina Ovchinnikova, Jon Bertsch, Jagadish Chandrabose Sundaramurthi, Mahathi Kandimalla, Paul A. Nicolopoulos, Alessandro Favognano, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy

Nucleic Acids Res., January, 2023

The IMG/M data management and analysis system v.7: content updates and new features.

I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Cody Webb, Dongying Wu, Neha Varghese, T. B. K. Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Natalia Ivanova

Nucleic Acids Res., January, 2023

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.

Antonio Pedro Camargo, Stephen Nayfach, I-Min A. Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan Ritter, T. B. K. Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Simon Roux

Nucleic Acids Res., January, 2023

Standardized naming of microbiome samples in Genomes OnLine Database.

Supratim Mukherjee, Galina Ovchinnikova, Dimitri Stamatis, Cindy Tianqing Li, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy

Database J. Biol. Databases Curation, January, 2023

2021

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

Simon Roux, David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, T. B. K. Reddy, Stephen Nayfach, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides

Nucleic Acids Res., 2021

Genomes OnLine Database (GOLD) v.8: overview and updates.

Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Jagadish Chandrabose Sundaramurthi, Janey Lee, Mahathi Kandimalla, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy

Nucleic Acids Res., 2021

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.

I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Neha Varghese, Rekha Seshadri, Simon Roux, Tanja Woyke, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2021

2020

IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase.

Krishnaveni Palaniappan, I-Min A. Chen, Ken Chu, Anna Ratner, Rekha Seshadri, Nikos Kyrpides, Natalia N. Ivanova, Nigel J. Mouncey

Nucleic Acids Res., 2020

2019

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.

David Páez-Espino, Simon Roux, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Marcel Huntemann, T. B. K. Reddy, Joan Carles Pons, Mercè Llabrés, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2019

Genomes OnLine database (GOLD) v.7: updates and new features.

Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Hema Y. Katta, Alejandro Mojica, I-Min A. Chen, Nikos Kyrpides, T. B. K. Reddy

Nucleic Acids Res., 2019

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

I-Min A. Chen, Ken Chu, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Marcel Huntemann, Neha Varghese, James R. White, Rekha Seshadri, Tatyana Smirnova, Edward Kirton, Sean P. Jungbluth, Tanja Woyke, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2019

2017

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.

Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova

Nucleic Acids Res., 2017

IMG/M: integrated genome and metagenome comparative data analysis system.

I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

2014

IMG 4 version of the integrated microbial genomes comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2014

IMG/M 4 version of the integrated metagenome comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2014

Maintaining a microbial genome & metagenome data analysis system in an academic setting.

I-Min A. Chen, Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Ken Chu

Proceedings of the Conference on Scientific and Statistical Database Management, 2014

2012

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata.

Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides

Nucleic Acids Res., 2012

IMG: the integrated microbial genomes database and comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2012

IMG/M: the integrated metagenome data management and comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2012

2010

The integrated microbial genomes system: an expanding comparative analysis resource.

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2010

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.

Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides

Nucleic Acids Res., 2010

2009

IMG ER: a system for microbial genome annotation expert review and curation.

Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides

Bioinform., 2009

2008

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2008

IMG/M: a data management and analysis system for metagenomes.

Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides

Nucleic Acids Res., 2008

2003

Integration Challenges in Gene Expression Data Management.

Victor M. Markowitz, John Campbell, I-Min A. Chen, Anthony Kosky, Krishna Palaniappan, Thodoros Topaloglou

Proceedings of the Bioinformatics, 2003

2002

Gene Expression Data Management: A Case Study.

Victor M. Markowitz, I-Min A. Chen, Anthony Kosky

Proceedings of the Advances in Database Technology, 2002

1998

Advanced Query Mechanisms for Biological Databases.

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Exploring Heterogeneous Biological Databases: Tools and Applications.

Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto

Proceedings of the Advances in Database Technology, 1998

Integrating Information from Multiple Independently Developed Data Sources.

I-Min A. Chen, Doron Rotem

Proceedings of the 1998 ACM CIKM International Conference on Information and Knowledge Management, 1998

1997

Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model.

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto

Proceedings of the Ninth International Conference on Scientific and Statistical Database Management, 1997

Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto

Proceedings of the Ninth International Conference on Scientific and Statistical Database Management, 1997

Developing and Accessing Scientific Databases with the OPM Data Management Tools.

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto

Proceedings of the Thirteenth International Conference on Data Engineering, 1997

1996

Query Answering Using Discovered Rules.

I-Min A. Chen

Proceedings of the Twelfth International Conference on Data Engineering, February 26, 1996

Version Management for Scientific Databases.

I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman

Proceedings of the Advances in Database Technology, 1996

1995

An Execution Model for Limited Ambiguity Rules and Its Application to Derived Data Update.

I-Min A. Chen, Richard Hull, Dennis McLeod

ACM Trans. Database Syst., 1995

An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools.

I-Min A. Chen, Victor M. Markowitz

Inf. Syst., 1995

Modeling Scientific Experiments with an Object Data Model.

I-Min A. Chen, Victor M. Markowitz

Proceedings of the Eleventh International Conference on Data Engineering, 1995

1994

Local Ambiguity and Derived Data Update.

I-Min A. Chen, Richard Hull, Dennis McLeod

Proceedings of the Fourth International Workshop on Research Issues in Data Engineering: Active Database Systems, 1994

1993

Data Management Tools for Genomic Applications: A Progress Report.

Victor M. Markowitz, I-Min A. Chen

Proceedings of the Database and Expert Systems Applications, 4th International Conference, 1993

1992

A Unified Approach to Data and Meta-data Modifications for Data/Knowledge Bases.

I-Min A. Chen, Dennis McLeod

Proceedings of the Theoretical Studies in Computer Science, 1992

1991

An Approach to Deriving Object Hierarchies from Database Schema and Contents.

I-Min A. Chen, Rei-Chi Lee

Proceedings of the Methodologies for Intelligent Systems, 6th International Symposium, 1991

1989

Derived Data Update in Semantic Databases.

I-Min A. Chen, Dennis McLeod

Proceedings of the Fifteenth International Conference on Very Large Data Bases, 1989