Hugh P. Shanahan

According to our database, Hugh P. Shanahan authored at least 18 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Intra-Exon Motif Correlations as a Proxy Measure for Mean Per-Tile Sequence Quality Data in RNA-Seq.

Jamie J. Alnasir, Hugh P. Shanahan

J. Comput. Biol., February, 2023

Foundational Data Science Training for Health Equity Researchers at Minority Serving Institutions: A SoRDS Event.

Robert Quick, Marcela Alfaro Cordoba, Stephen Diggs, Raphael Cobe, Louise Bezuidenhout, Hugh P. Shanahan, Bianca Peterson

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

2022

Rethinking the A in FAIR Data: Issues of Data Access and Accessibility in Research.

Hugh P. Shanahan, Louise Bezuidenhout

Frontiers Res. Metrics Anal., 2022

2021

Progress toward a comprehensive teaching approach to the FAIR data principles.

Hugh P. Shanahan, Nancy Hoebelheinrich, Angus Whyte

Patterns, 2021

A School and a Network: CODATA-RDA Data Science Summer Schools Alumni Survey.

Louise Bezuidenhout, Sara Drummond-Curtis, Bridget Walker, Hugh P. Shanahan, Marcela Alfaro Cordoba

Data Sci. J., 2021

2020

"Ethics When You Least Expect It": A Modular Approach to Short Course Data Ethics Instruction.

Louise Bezuidenhout, Robert Quick, Hugh P. Shanahan

Sci. Eng. Ethics, 2020

The CODATA-RDA Data Steward School.

Daniel Bangert, Joy Davidson, Steve Diggs, Marjan Grootveld, Hugh P. Shanahan, Shanmugasundaram Venkataraman

Int. J. Digit. Curation, 2020

Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data.

Peter McQuilton, Dominique Batista, Oya Beyan, Ramón Granell, Simon J. Coles, Massimiliano Izzo, Allyson L. Lister, Robert Pergl, Philippe Rocca-Serra, Ben Schaap, Hugh P. Shanahan, Milo Thurston, Susanna-Assunta Sansone

Data Intell., 2020

The application of Hadoop in structural bioinformatics.

Jamie J. Alnasir, Hugh P. Shanahan

Briefings Bioinform., 2020

2019

The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data.

Peter Wittenburg, Hana Pergl Sustkova, Annalisa Montesanti, Margreet Bloemers, S. H. de Waard, Mark A. Musen, John Graybeal, Kristina M. Hettne, Annika Jacobsen, Robert Pergl, Rob W. W. Hooft, Christine Staiger, Celia W. G. van Gelder, Sebastiaan L. Knijnenburg, A. C. van Arkel, Bert Meerman, Mark D. Wilkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, Peter McQuilton, Alejandra N. González-Beltrán, G. J. C. Aben, Patrícia Henning, Maria Simone de Menezes Alencar, C. Ribeiro, C. R. L. Silva, Luís Fernando Sayão, Luana Sales, Viviane Veiga, Jefferson Lima, Simone Dib, Paula Xavier dos Santos, R. Murtinho, Jakob Tendel, B. F. Schaap, P. M. Brouwer, A. K. Gavai, Yamine Bouzembrak, Hans J. P. Marvin, Albert Mons, Tobias Kuhn, Alessa A. Gambardella, Ricardo de Miranda Azevedo, Vesa Muhonen, Mira van der Naald, N. W. Smit, M. J. Buys, Taco F. de Bruin, Fieke Schoots, H. J. E. Goodson, Henry S. Rzepa, Keith G. Jeffery, Hugh P. Shanahan, M. Axton, Veniamin Tkachenko, Anne Deslattes Mays, Natalie Meyers, Michael Conlon, Laurel L. Haak, Erik A. Schultes

CoRR, 2019

2018

Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce.

Jamie J. Alnasir, Hugh P. Shanahan

Int. J. Found. Comput. Sci., 2018

Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis.

Golestan Sally Radwan, Hugh P. Shanahan

Proceedings of the Computational Methods in Systems Biology, 2018

2017

Biological Big Bytes: Integrative Analysis of Large Biological Datasets.

Ming Chen, Andrew P. Harrison, Hugh P. Shanahan, Yuriy L. Orlov

J. Integr. Bioinform., 2017

A Novel Method to Detect Bias in Short Read NGS Data.

Jamie J. Alnasir, Hugh P. Shanahan

J. Integr. Bioinform., 2017

2014

An Overview of Gene Regulation.

Andrew P. Harrison, Hugh P. Shanahan

Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2009

Can we improve on the identification of transcription factor binding sites?

Hugh P. Shanahan

Proceedings of the ACM SIGKDD Workshop on Statistical and Relational Learning in Bioinformatics, 2009

2005

HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif.

Carles Ferrer-Costa, Hugh P. Shanahan, Susan Jones, Janet M. Thornton

Bioinform., 2005

2004

An examination of the conservation of surface patch polarity for proteins.

Hugh P. Shanahan, Janet M. Thornton

Bioinform., 2004