Hsi-Yuan Huang

According to our database, Hsi-Yuan Huang authored at least 23 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2024

DrugRepoBank: a comprehensive database and discovery platform for accelerating drug repositioning.

Yixian Huang, Danhong Dong, Wenyang Zhang, Ruiting Wang, Yang-Chi-Dung Lin, Hua-Li Zuo, Hsi-Yuan Huang, Hsien-Da Huang

Database J. Biol. Databases Curation, January, 2024

DeepDrugmiR: a two-stage deep learning method for inferring small molecules' regulatory effects on microRNA expression.

Yixian Huang, Huacong Wu, Ying Cai, Danhong Dong, Sicong Yu, Yigang Chen, Zihao Zhu, Yang-Chi-Dung Lin, Hsien-Da Huang, Hsi-Yuan Huang

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2023

Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis.

Yigang Chen, Yang-Chi-Dung Lin, Yijun Luo, Xiao-Xuan Cai, Peng Qiu, Shi-Dong Cui, Zhe Wang, Hsi-Yuan Huang, Hsien-Da Huang

Briefings Bioinform., May, 2023

Extraction of microRNA-target interaction sentences from biomedical literature by deep learning approach.

Mengqi Luo, Shangfu Li, Yuxuan Pang, Lantian Yao, Renfei Ma, Hsi-Yuan Huang, Hsien-Da Huang, Tzong-Yi Lee

Briefings Bioinform., January, 2023

2022

miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions.

Hsi-Yuan Huang, Yang-Chi-Dung Lin, Shi-Dong Cui, Yixian Huang, Yun Tang, Jia-Tong Xu, Jiayang Bao, Yulin Li, Jia Wen, Hua-Li Zuo, Weijuan Wang, Jing Li, Jie Ni, Yini Ruan, Liping Li, Yidan Chen, Yue-Yang Xie, Zihao Zhu, Xiao-Xuan Cai, Xin-Yi Chen, Lantian Yao, Yigang Chen, Yijun Luo, Shupeng Luxu, Mengqi Luo, Chih-Min Chiu, Kun Ma, Lizhe Zhu, Gui-Juan Cheng, Chen Bai, Ying-Chih Chiang, Liping Wang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang

Nucleic Acids Res., 2022

CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers.

Yigang Chen, Lantian Yao, Yun Tang, Jhih-Hua Jhong, Jingting Wan, Jingyue Chang, Shi-Dong Cui, Yijun Luo, Xiao-Xuan Cai, Wenshuo Li, Qi Chen, Hsi-Yuan Huang, Zhuo Wang, Weiming Chen, Tzu-Hao Chang, Feng-Xiang Wei, Tzong-Yi Lee, Hsien-Da Huang

Nucleic Acids Res., 2022

2021

MethHC 2.0: information repository of DNA methylation and gene expression in human cancer.

Hsi-Yuan Huang, Jing Li, Yun Tang, Yi-Xian Huang, Yigang Chen, Yue-Yang Xie, Zhe-Yuan Zhou, Xin-Yi Chen, Si-Yuan Ding, Meng-Fan Luo, Chen-Nan Jin, Le-Shan Zhao, Jia-Tong Xu, Ying Zhou, Yang-Chi-Dung Lin, Hsiao-Chin Hong, Hua-Li Zuo, Si-Yao Hu, Pei-Yi Xu, Xin Li, Hsien-Da Huang

Nucleic Acids Res., 2021

2020

miRTarBase 2020: updates to the experimentally validated microRNA?target interaction database.

Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, Kai-Yao Huang, Sirjana Shrestha, Hsiao-Chin Hong, Yun Tang, Yigang Chen, Chen-Nan Jin, Yuan Yu, Jia-Tong Xu, Yue-Ming Li, Xiao-Xuan Cai, Zhen-Yu Zhou, Xiao-Hang Chen, Yuan-Yuan Pei, Liang Hu, Jin-Jiang Su, Shi-Dong Cui, Fei Wang, Yue-Yang Xie, Si-Yuan Ding, Meng-Fan Luo, Chih-Hung Chou, Nai-Wen Chang, Kai-Wen Chen, Yu-Hsiang Cheng, Xin-Hong Wan, Wen-Lian Hsu, Tzong-Yi Lee, Feng-Xiang Wei, Hsien-Da Huang

Nucleic Acids Res., 2020

Multi-omics profiling reveals microRNA-mediated insulin signaling networks.

Yang-Chi-Dung Lin, Hsi-Yuan Huang, Sirjana Shrestha, Chih-Hung Chou, Yen-Hua Chen, Chi-Ru Chen, Hsiao-Chin Hong, Jing Li, Yi-An Chang, Men-Yee Chiew, Ya-Rong Huang, Siang-Jyun Tu, Ting-Hsuan Sun, Shun-Long Weng, Ching-Ping Tseng, Hsien-Da Huang

BMC Bioinform., 2020

2018

The aquatic animals' transcriptome resource for comparative functional analysis.

Chih-Hung Chou, Hsi-Yuan Huang, Wei-Chih Huang, Sheng-Da Hsu, Chung-Der Hsiao, Chia-Yu Liu, Yu-Hung Chen, Yu-Chen Liu, Wei-Yun Huang, Meng-Lin Lee, Yi-Chang Chen, Hsien-Da Huang

BMC Genom., 2018

Mutation Analysis of Second Primary Tumors in the Head and Neck Cancer by Next Generation Sequencing.

Ting-Yuan Liu, Chien-Chin Lee, Hsi-Yuan Huang, Jan-Gowth Chang

Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

2017

Semiconductor Supply Chain Planning With Decisions of Decoupling Point and VMI Scenario.

Mu-Chen Chen, Yu-Hsiang Hsiao, Hsi-Yuan Huang

IEEE Trans. Syst. Man Cybern. Syst., 2017

2016

An Integrative Analysis for Cancer Studies.

Hsi-Yuan Huang, Chien-Yu Lin, Chin-An Yang, Cheng-Mao Ho, Ya-Sian Chang, Jan-Gowth Chang

Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

Establish Reporting Format of Gene Related Rare-Diseases by Exome Sequencing in the Clinical Medical Laboratory.

Cheng-Mao Ho, Hsi-Yuan Huang, Chin-An Yang, Ya-Sian Chang, Chien-Yu Lin, Jan-Gowth Chang

Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

2015

MethHC: a database of DNA methylation and gene expression in human cancer.

Wei-Yun Huang, Sheng-Da Hsu, Hsi-Yuan Huang, Yi-Ming Sun, Chih-Hung Chou, Shun-Long Weng, Hsien-Da Huang

Nucleic Acids Res., 2015

Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.

Sheng-Da Hsu, Hsi-Yuan Huang, Chih-Hung Chou, Yi-Ming Sun, Ming-Ta Hsu, Ann-Ping Tsou

BMC Genom., 2015

2014

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions.

Sheng-Da Hsu, Yu-Ting Tseng, Sirjana Shrestha, Yu-Ling Lin, Anas Khaleel, Chih-Hung Chou, Chao-Fang Chu, Hsi-Yuan Huang, Ching-Min Lin, Shu-Yi Ho, Ting-Yan Jian, Feng-Mao Lin, Tzu-Hao Chang, Shun-Long Weng, Kuang-Wen Liao, I-En Liao, Chun-Chi Liu, Hsien-Da Huang

Nucleic Acids Res., 2014

2013

An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs.

Tzu-Hao Chang, Hsi-Yuan Huang, Justin Bo-Kai Hsu, Shun-Long Weng, Jorng-Tzong Horng, Hsien-Da Huang

BMC Bioinform., 2013

2009

sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes.

Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang

Nucleic Acids Res., 2009

2007

Primer design for multiplex PCR using a genetic algorithm.

Li-Cheng Wu, Jorng-Tzong Horng, Hsi-Yuan Huang, Feng-Mao Lin, Hsien-Da Huang, Meng-Feng Tsai

Soft Comput., 2007

2006

dbPTM: an information repository of protein post-translational modification.

Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang

Nucleic Acids Res., 2006

RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.

Hsi-Yuan Huang, Chia-Hung Chien, Kuan-Hua Jen, Hsien-Da Huang

Nucleic Acids Res., 2006

2005

Primer design for multiplex PCR using a genetic algorithm.

Feng-Mao Lin, Hsien-Da Huang, Hsi-Yuan Huang, Jorng-Tzong Horng

Proceedings of the Genetic and Evolutionary Computation Conference, 2005