Hosna Jabbari

Orcid: 0000-0002-7155-2297

According to our database1, Hosna Jabbari authored at least 22 papers between 2007 and 2024.

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Bibliography

2024
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration.
Algorithms Mol. Biol., December, 2024

DinoKnot: Duplex Interaction of Nucleic Acids With PseudoKnots.
IEEE ACM Trans. Comput. Biol. Bioinform., 2024

2023
Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.
PLoS Comput. Biol., February, 2023

SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles.
Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2022
AI-powered aptamer generation.
Nat. Comput. Sci., 2022

Supervised promoter recognition: a benchmark framework.
BMC Bioinform., 2022

KnotAli: informed energy minimization through the use of evolutionary information.
BMC Bioinform., 2022

A QUBO model of the RNA folding problem optimized by variational hybrid quantum annealing.
Proceedings of the IEEE International Conference on Quantum Computing and Engineering, 2022

2021
SARS-CoV-2 Ribosomal Frameshifting Pseudoknot: Detection of Inter-viral Structural Similarity.
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

In silico prediction of COVID-19 test efficiency with DinoKnot.
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

Identification of conserved and evolving RNA secondary structures in SARS-CoV-2 and related viruses.
Proceedings of the CASCON '21: Proceedings of the 31st Annual International Conference on Computer Science and Software Engineering, Toronto, Ontario, Canada, November 22, 2021

Viz23: web server for visualization of gene expression and locational information.
Proceedings of the CASCON '21: Proceedings of the 31st Annual International Conference on Computer Science and Software Engineering, Toronto, Ontario, Canada, November 22, 2021

2018
Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.
Bioinform., 2018

2017
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice.
Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

2016
Sparse RNA folding revisited: space-efficient minimum free energy structure prediction.
Algorithms Mol. Biol., 2016

2015
Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction.
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014
A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
BMC Bioinform., 2014

2009
Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges.
Theor. Comput. Sci., 2009

An <i>O</i>(<i>n</i><sup>5</sup>) Algorithm for MFE Prediction of Kissing Hairpins and 4-Chains in Nucleic Acids.
J. Comput. Biol., 2009

2008
Novel and Efficient RNA Secondary Structure Prediction Using Hierarchical Folding.
J. Comput. Biol., 2008

2007
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

A New Class of Cellular Automata.
Proceedings of the Tenth Euromicro Conference on Digital System Design: Architectures, 2007


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