Hosna Jabbari

According to our database, Hosna Jabbari authored at least 23 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration.

Mateo Gray, Sebastian Will, Hosna Jabbari

Algorithms Mol. Biol., December, 2024

DinoKnot: Duplex Interaction of Nucleic Acids With PseudoKnots.

Tara Newman, Hiu Fung Kevin Chang, Hosna Jabbari

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot.

Luke Trinity, Ulrike Stege, Hosna Jabbari

PLoS Comput. Biol., 2024

2023

Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot.

Luke Trinity, Ian Wark, Lance Lansing, Hosna Jabbari, Ulrike Stege

PLoS Comput. Biol., February, 2023

SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles.

Mateo Gray, Sebastian Will, Hosna Jabbari

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2022

AI-powered aptamer generation.

Majid Khabbazian, Hosna Jabbari

Nat. Comput. Sci., 2022

Supervised promoter recognition: a benchmark framework.

Raul I. Perez Martell, Alison Ziesel, Hosna Jabbari, Ulrike Stege

BMC Bioinform., 2022

KnotAli: informed energy minimization through the use of evolutionary information.

Mateo Gray, Sean Chester, Hosna Jabbari

BMC Bioinform., 2022

A QUBO model of the RNA folding problem optimized by variational hybrid quantum annealing.

Tristan Zaborniak, Juan Giraldo, Hausi A. Müller, Hosna Jabbari, Ulrike Stege

Proceedings of the IEEE International Conference on Quantum Computing and Engineering, 2022

2021

SARS-CoV-2 Ribosomal Frameshifting Pseudoknot: Detection of Inter-viral Structural Similarity.

Luke Trinity, Lance Lansing, Hosna Jabbari, Ulrike Stege

Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

In silico prediction of COVID-19 test efficiency with DinoKnot.

Tara Newman, Hiu Fung Kevin Chang, Hosna Jabbari

Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

Identification of conserved and evolving RNA secondary structures in SARS-CoV-2 and related viruses.

Alison Ziesel, Hosna Jabbari

Proceedings of the CASCON '21: Proceedings of the 31st Annual International Conference on Computer Science and Software Engineering, Toronto, Ontario, Canada, November 22, 2021

Viz23: web server for visualization of gene expression and locational information.

Luke Trinity, Andrew Hollar, Haley Greenyer, Hosna Jabbari, Ulrike Stege

Proceedings of the CASCON '21: Proceedings of the 31st Annual International Conference on Computer Science and Software Engineering, Toronto, Ontario, Canada, November 22, 2021

2018

Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.

Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will

Bioinform., 2018

2017

Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice.

Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will

Proceedings of the 17th International Workshop on Algorithms in Bioinformatics, 2017

2016

Sparse RNA folding revisited: space-efficient minimum free energy structure prediction.

Sebastian Will, Hosna Jabbari

Algorithms Mol. Biol., 2016

2015

Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction.

Sebastian Will, Hosna Jabbari

Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014

A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.

Hosna Jabbari, Anne Condon

BMC Bioinform., 2014

2009

Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges.

Anne Condon, Hosna Jabbari

Theor. Comput. Sci., 2009

An <i>O</i>(<i>n</i>⁵) Algorithm for MFE Prediction of Kissing Hairpins and 4-Chains in Nucleic Acids.

Ho-Lin Chen, Anne Condon, Hosna Jabbari

J. Comput. Biol., 2009

2008

Novel and Efficient RNA Secondary Structure Prediction Using Hierarchical Folding.

Hosna Jabbari, Anne Condon, Shelly Zhao

J. Comput. Biol., 2008

2007

HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding.

Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

A New Class of Cellular Automata.

Hosna Jabbari, Jon C. Muzio, Lin Sun

Proceedings of the Tenth Euromicro Conference on Digital System Design: Architectures, 2007