Hongyi Xin

According to our database, Hongyi Xin authored at least 21 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Semantic-Based Implicit Feature Transform for Few-Shot Classification.

Meihong Pan, Hongyi Xin, Hong-Bin Shen

Int. J. Comput. Vis., November, 2024

Team YXZ at BioLaySumm: Adapting Large Language Models for Biomedical Lay Summarization.

Jieli Zhou, Cheng Ye, Pengcheng Xu, Hongyi Xin

Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024

L2 Normalization and Geodesic Distance for Enhanced Information Preservation in Visualizing High-dimensional Single-cell Sequencing Data.

Ziqi Rong, Jinpu Cai, Jiahao Qiu, Pengcheng Xu, Lana X. Garmire, Qiuyu Lian, Hongyi Xin

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2023

Few-shot classification with task-adaptive semantic feature learning.

Meihong Pan, Hongyi Xin, Chun-Qiu Xia, Hong-Bin Shen

Pattern Recognit., September, 2023

MIRACLE: Multi-task Learning based Interpretable Regulation of Autoimmune Diseases through Common Latent Epigenetics.

Pengcheng Xu, Jinpu Cai, Yulin Gao, Ziqi Rong, Hongyi Xin

CoRR, 2023

2022

TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics.

Yiran Shan, Qian Zhang, Wenbo Guo, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu

Genom. Proteom. Bioinform., October, 2022

SODA: Detecting COVID-19 in Chest X-Rays With Semi-Supervised Open Set Domain Adaptation.

Jieli Zhou, Baoyu Jing, Zeya Wang, Hongyi Xin, Hanghang Tong

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2020

Deep-learning-based prediction of late age-related macular degeneration progression.

Qi Yan, Daniel E. Weeks, Hongyi Xin, Anand Swaroop, Emily Y. Chew, Heng Huang, Ying Ding, Wei Chen

Nat. Mach. Intell., 2020

Artificial-cell-type aware cell-type classification in CITE-seq.

Qiuyu Lian, Hongyi Xin, Jianzhu Ma, Liza Konnikova, Wei Chen, Jin Gu, Kong Chen

Bioinform., 2020

Context-aware seeds for read mapping.

Hongyi Xin, Mingfu Shao, Carl Kingsford

Algorithms Mol. Biol., 2020

2019

Adaptively Accelerating Map-Reduce/Spark with GPUs: A Case Study.

K. R. Jayaram, Anshul Gandhi, Hongyi Xin, Shu Tao

Proceedings of the 2019 IEEE International Conference on Autonomic Computing, 2019

2018

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.

Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu

BMC Genom., 2018

2017

GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.

Mohammed Alser, Hasan Hassan, Hongyi Xin, Oguz Ergin, Onur Mutlu, Can Alkan

Bioinform., 2017

2016

GateKeeper: Enabling Fast Pre-Alignment in DNA Short Read Mapping with a New Streaming Accelerator Architecture.

Mohammed Alser, Hasan Hassan, Hongyi Xin, Oguz Ergin, Onur Mutlu, Can Alkan

CoRR, 2016

Optimal seed solver: optimizing seed selection in read mapping.

Hongyi Xin, Sunny Nahar, Richard L. Zhu, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu

Bioinform., 2016

2015

Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.

Hongyi Xin, John Greth, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu

Bioinform., 2015

2014

Mitigating Prefetcher-Caused Pollution Using Informed Caching Policies for Prefetched Blocks.

Vivek Seshadri, Samihan Yedkar, Hongyi Xin, Onur Mutlu, Phillip B. Gibbons, Michael A. Kozuch, Todd C. Mowry

ACM Trans. Archit. Code Optim., 2014

2013

Accelerating read mapping with FastHASH.

Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan

BMC Genom., 2013

Linearly compressed pages: a low-complexity, low-latency main memory compression framework.

Gennady Pekhimenko, Vivek Seshadri, Yoongu Kim, Hongyi Xin, Onur Mutlu, Phillip B. Gibbons, Michael A. Kozuch, Todd C. Mowry

Proceedings of the 46th Annual IEEE/ACM International Symposium on Microarchitecture, 2013

EMERALD: Characterization of emerging applications and algorithms for low-power devices.

Chuanjun Zhang, Glenn G. Ko, Jungwook Choi, Shang-nien Tsai, Minje Kim, Abner Guzmán-Rivera, Rob A. Rutenbar, Paris Smaragdis, Mi Sun Park, Vijaykrishnan Narayanan, Hongyi Xin, Onur Mutlu, Bin Li, Li Zhao, Mei Chen

Proceedings of the 2012 IEEE International Symposium on Performance Analysis of Systems & Software, 2013

2012

A case for unlimited watchpoints.

Joseph L. Greathouse, Hongyi Xin, Yixin Luo, Todd M. Austin

Proceedings of the 17th International Conference on Architectural Support for Programming Languages and Operating Systems, 2012