Hongwei Huo

Orcid: 0000-0002-5436-1851

According to our database1, Hongwei Huo authored at least 46 papers between 2005 and 2024.

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Bibliography

2024
An efficient Burrows-Wheeler transform-based aligner for short read mapping.
Comput. Biol. Chem., 2024

2023
Practical High-Order Entropy-Compressed Text Self-Indexing.
IEEE Trans. Knowl. Data Eng., March, 2023

RASK: Range Spatial Keyword Queries on Massive Encrypted Geo-Textual Data.
IEEE Trans. Serv. Comput., 2023

2022
Optimal in-place suffix sorting.
Inf. Comput., 2022

CIndex: compressed indexes for fast retrieval of FASTQ files.
Bioinform., 2022

2021
MSQ-Index: A Succinct Index for Fast Graph Similarity Search.
IEEE Trans. Knowl. Data Eng., 2021

Efficient Compression and Indexing for Highly Repetitive DNA Sequence Collections.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

2020
Feature reduction based on semantic similarity for graph classification.
Neurocomputing, 2020

2019
An efficient algorithm for graph edit distance computation.
Knowl. Based Syst., 2019

A new algorithm for DNA motif discovery using multiple sample sequence sets.
J. Bioinform. Comput. Biol., 2019

2018
SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.
BMC Bioinform., 2018

Fast Top-K Graph Similarity Search Via Representative Matrices.
IEEE Access, 2018

Practical Succinct Text Indexes in External Memory.
Proceedings of the 2018 Data Compression Conference, 2018

2017
Fast Computation of Graph Edit Distance.
CoRR, 2017

Efficient Graph Similarity Search in External Memory.
IEEE Access, 2017

2016
MSQ-Index: A Succinct Index for Fast Graph Similarity Search.
CoRR, 2016

RefSelect: a reference sequence selection algorithm for planted (<i>l</i>, <i>d</i>) motif search.
BMC Bioinform., 2016

CS2A: A Compressed Suffix Array-Based Method for Short Read Alignment.
Proceedings of the 2016 Data Compression Conference, 2016

2015
An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

A dynamic energy-saving strategy for green cellular railway communication network.
EURASIP J. Wirel. Commun. Netw., 2015

Reference sequence selection for motif searches.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A Data-Aware FM-index.
Proceedings of the Seventeenth Workshop on Algorithm Engineering and Experiments, 2015

2014
A Practical Implementation of Compressed Suffix Arrays with Applications to Self-Indexing.
Proceedings of the Data Compression Conference, 2014

An efficient motif finding algorithm for large DNA data sets.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
A Heuristic Cluster-Based EM Algorithm for the Planted (L, d) Problem.
J. Bioinform. Comput. Biol., 2013

StemFinder: An efficient algorithm for searching motif stems over large alphabets.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
A MapReduce-based Algorithm for Motif Search.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

A multi-channel MAC protocol design based on IEEE 802.15.4 standard in industry.
Proceedings of the IEEE 10th International Conference on Industrial Informatics, 2012

2011
Wireless-Sensor-Networks-based healthcare system: a survey on the view of communication paradigms.
Int. J. Ad Hoc Ubiquitous Comput., 2011

2010
Wireless sensor network based E-health system ?? implementation and experimental results.
IEEE Trans. Consumer Electron., 2010

Optimizing genetic algorithm for motif discovery.
Math. Comput. Model., 2010

A Quantum-Inspired Genetic Algorithm Based on Probabilistic Coding for Multiple Sequence Alignment.
J. Bioinform. Comput. Biol., 2010

2009
Repeats identification using improved suffix trees.
Int. J. Comput. Biol. Drug Des., 2009

An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

2008
A Greedy Two-stage Gibbs Sampling Method for Motif Discovery in Biological Sequences.
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007
An Enhanced DV-hop Localization Algorithm for Irregularly Shaped Sensor Networks.
Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007

ASDP: An Action-Based Service Discovery Protocol Using Ant Colony Algorithm in Wireless Sensor Networks.
Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007

An Energy Efficient Communication Protocol Based on Data Equilibrium in Mobile Wireless Sensor Network.
Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007

A simulated annealing algorithm for multiple sequence alignment with guaranteed accuracy.
Proceedings of the Third International Conference on Natural Computation, 2007

A Suffix Tree Construction Algorithm for DNA Sequences.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences.
Proceedings of the Advances in Natural Computation, Second International Conference, 2006

Software Agents Action Securities.
Proceedings of the Computational Intelligence and Security, International Conference, 2006

Two-Phase Quantum Based Evolutionary Algorithm for Multiple Sequence Alignment.
Proceedings of the Computational Intelligence and Security, International Conference, 2006

2005
A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm.
Proceedings of the Computational Intelligence and Bioinspired Systems, 2005

Simulated Annealing with Injecting Star-Alignment for Multiple Sequence Alignments.
Proceedings of the Computational Intelligence and Security, International Conference, 2005

HGA-COFFEE : Aligning Multiple Sequences by Hybrid Genetic Algorithm.
Proceedings of the Advanced Data Mining and Applications, First International Conference, 2005


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