Hongwei Huo

Orcid: 0000-0002-5436-1851

According to our database¹, Hongwei Huo authored at least 46 papers between 2005 and 2024.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of three.

Timeline

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In proceedings

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PhD thesis

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On csauthors.net:

Bibliography

2024

An efficient Burrows-Wheeler transform-based aligner for short read mapping.

[BibT_eX]

[DOI]

Lilu Guo

Hongwei Huo

Comput. Biol. Chem., 2024

2023

Practical High-Order Entropy-Compressed Text Self-Indexing.

[BibT_eX]

[DOI]

Hongwei Huo

Peng Long

Jeffrey Scott Vitter

IEEE Trans. Knowl. Data Eng., March, 2023

RASK: Range Spatial Keyword Queries on Massive Encrypted Geo-Textual Data.

[BibT_eX]

[DOI]

IEEE Trans. Serv. Comput., 2023

2022

Optimal in-place suffix sorting.

[BibT_eX]

[DOI]

Zhize Li

Jian Li

Hongwei Huo

Inf. Comput., 2022

CIndex: compressed indexes for fast retrieval of FASTQ files.

[BibT_eX]

[DOI]

Bioinform., 2022

2021

MSQ-Index: A Succinct Index for Fast Graph Similarity Search.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 2021

Efficient Compression and Indexing for Highly Repetitive DNA Sequence Collections.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

2020

Feature reduction based on semantic similarity for graph classification.

[BibT_eX]

[DOI]

Neurocomputing, 2020

2019

An efficient algorithm for graph edit distance computation.

[BibT_eX]

[DOI]

Knowl. Based Syst., 2019

A new algorithm for DNA motif discovery using multiple sample sequence sets.

[BibT_eX]

[DOI]

Qiang Yu

Xiang Zhao

Hongwei Huo

J. Bioinform. Comput. Biol., 2019

2018

SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.

[BibT_eX]

[DOI]

Qiang Yu

Dingbang Wei

Hongwei Huo

BMC Bioinform., 2018

Fast Top-K Graph Similarity Search Via Representative Matrices.

[BibT_eX]

[DOI]

Zhigang Sun

Hongwei Huo

Xiaoyang Chen

IEEE Access, 2018

Practical Succinct Text Indexes in External Memory.

[BibT_eX]

[DOI]

Proceedings of the 2018 Data Compression Conference, 2018

2017

Fast Computation of Graph Edit Distance.

[BibT_eX]

[DOI]

CoRR, 2017

Efficient Graph Similarity Search in External Memory.

[BibT_eX]

[DOI]

IEEE Access, 2017

2016

MSQ-Index: A Succinct Index for Fast Graph Similarity Search.

[BibT_eX]

[DOI]

CoRR, 2016

RefSelect: a reference sequence selection algorithm for planted (<i>l</i>, <i>d</i>) motif search.

[BibT_eX]

[DOI]

BMC Bioinform., 2016

CS2A: A Compressed Suffix Array-Based Method for Short Read Alignment.

[BibT_eX]

[DOI]

Proceedings of the 2016 Data Compression Conference, 2016

2015

An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

A dynamic energy-saving strategy for green cellular railway communication network.

[BibT_eX]

[DOI]

Jiying Huang

Zhangdui Zhong

Hongwei Huo

EURASIP J. Wirel. Commun. Netw., 2015

Reference sequence selection for motif searches.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A Data-Aware FM-index.

[BibT_eX]

[DOI]

Proceedings of the Seventeenth Workshop on Algorithm Engineering and Experiments, 2015

2014

A Practical Implementation of Compressed Suffix Arrays with Applications to Self-Indexing.

[BibT_eX]

[DOI]

Proceedings of the Data Compression Conference, 2014

An efficient motif finding algorithm for large DNA data sets.

[BibT_eX]

[DOI]

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

A Heuristic Cluster-Based EM Algorithm for the Planted (L, d) Problem.

[BibT_eX]

[DOI]

Yipu Zhang

Hongwei Huo

Qiang Yu

J. Bioinform. Comput. Biol., 2013

StemFinder: An efficient algorithm for searching motif stems over large alphabets.

[BibT_eX]

[DOI]

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

A MapReduce-based Algorithm for Motif Search.

[BibT_eX]

[DOI]

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

A multi-channel MAC protocol design based on IEEE 802.15.4 standard in industry.

[BibT_eX]

[DOI]

Cuimei Wu

Hairong Yan

Hongwei Huo

Proceedings of the IEEE 10th International Conference on Industrial Informatics, 2012

2011

Wireless-Sensor-Networks-based healthcare system: a survey on the view of communication paradigms.

[BibT_eX]

[DOI]

Int. J. Ad Hoc Ubiquitous Comput., 2011

2010

Wireless sensor network based E-health system ?? implementation and experimental results.

[BibT_eX]

[DOI]

IEEE Trans. Consumer Electron., 2010

Optimizing genetic algorithm for motif discovery.

[BibT_eX]

[DOI]

Math. Comput. Model., 2010

A Quantum-Inspired Genetic Algorithm Based on Probabilistic Coding for Multiple Sequence Alignment.

[BibT_eX]

[DOI]

Hongwei Huo

Vojislav Stojkovic

Qiao-Luan Xie

J. Bioinform. Comput. Biol., 2010

2009

Repeats identification using improved suffix trees.

[BibT_eX]

[DOI]

Hongwei Huo

Xiaowu Wang

Vojislav Stojkovic

Int. J. Comput. Biol. Drug Des., 2009

An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence.

[BibT_eX]

[DOI]

Hongwei Huo

Xiaowu Wang

Vojislav Stojkovic

Proceedings of the International Joint Conferences on Bioinformatics, 2009

2008

A Greedy Two-stage Gibbs Sampling Method for Motif Discovery in Biological Sequences.

[BibT_eX]

[DOI]

Lifang Liu

Licheng Jiao

Hongwei Huo

Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007

An Enhanced DV-hop Localization Algorithm for Irregularly Shaped Sensor Networks.

[BibT_eX]

[DOI]

Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007

ASDP: An Action-Based Service Discovery Protocol Using Ant Colony Algorithm in Wireless Sensor Networks.

[BibT_eX]

[DOI]

Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007

An Energy Efficient Communication Protocol Based on Data Equilibrium in Mobile Wireless Sensor Network.

[BibT_eX]

[DOI]

Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007

A simulated annealing algorithm for multiple sequence alignment with guaranteed accuracy.

[BibT_eX]

[DOI]

Hongwei Huo

Vojislav Stojkovic

Proceedings of the Third International Conference on Natural Computation, 2007

A Suffix Tree Construction Algorithm for DNA Sequences.

[BibT_eX]

[DOI]

Hongwei Huo

Vojislav Stojkovic

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences.

[BibT_eX]

[DOI]

Hongwei Huo

Vojislav Stojkovic

Zhiwei Xiao

Proceedings of the Advances in Natural Computation, Second International Conference, 2006

Software Agents Action Securities.

[BibT_eX]

[DOI]

Vojislav Stojkovic

Hongwei Huo

Proceedings of the Computational Intelligence and Security, International Conference, 2006

Two-Phase Quantum Based Evolutionary Algorithm for Multiple Sequence Alignment.

[BibT_eX]

[DOI]

Hongwei Huo

Vojislav Stojkovic

Proceedings of the Computational Intelligence and Security, International Conference, 2006

2005

A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm.

[BibT_eX]

[DOI]

Lifang Liu

Hongwei Huo

Bao-Shu Wang

Proceedings of the Computational Intelligence and Bioinspired Systems, 2005

Simulated Annealing with Injecting Star-Alignment for Multiple Sequence Alignments.

[BibT_eX]

[DOI]

Hongwei Huo

Hua Ming

Proceedings of the Computational Intelligence and Security, International Conference, 2005

HGA-COFFEE : Aligning Multiple Sequences by Hybrid Genetic Algorithm.

[BibT_eX]

[DOI]

Lifang Liu

Hongwei Huo

Bao-Shu Wang

Proceedings of the Advanced Data Mining and Applications, First International Conference, 2005

Hongwei Huo

Timeline

Legend:

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On csauthors.net:

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