Honglin Li
Orcid: 0000-0003-2270-1900Affiliations:
- East China University of Science and Technology, Key Laboratory of New Drug Design, Shanghai, China
According to our database1,
Honglin Li
authored at least 45 papers
between 2006 and 2024.
Collaborative distances:
Collaborative distances:
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Bibliography
2024
A Transformative Topological Representation for Link Modeling, Prediction and Cross-Domain Network Analysis.
IEEE Trans. Pattern Anal. Mach. Intell., September, 2024
MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics.
Briefings Bioinform., January, 2024
Sliding-attention transformer neural architecture for predicting T cell receptor-antigen-human leucocyte antigen binding.
Nat. Mac. Intell., 2024
Enhancing Chemical Reaction Monitoring with a Deep Learning Model for NMR Spectra Image Matching to Target Compounds.
J. Chem. Inf. Model., 2024
Prototype-based contrastive substructure identification for molecular property prediction.
Briefings Bioinform., 2024
Proceedings of the International Joint Conference on Neural Networks, 2024
2023
Nucleic Acids Res., July, 2023
MacFrag: segmenting large-scale molecules to obtain diverse fragments with high qualities.
Bioinform., January, 2023
2022
VRPharmer: bringing virtual reality into pharmacophore-based virtual screening with interactive exploration and realistic visualization.
Bioinform., October, 2022
Molecular Docking for Ligand-Receptor Binding Process Based on Heterogeneous Computing.
Sci. Program., 2022
SwinOCSR: end-to-end optical chemical structure recognition using a Swin Transformer.
J. Cheminformatics, 2022
J. Cheminformatics, 2022
PFmulDL: a novel strategy enabling multi-class and multi-label protein function annotation by integrating diverse deep learning methods.
Comput. Biol. Medicine, 2022
ncRNAInter: a novel strategy based on graph neural network to discover interactions between lncRNA and miRNA.
Briefings Bioinform., 2022
Briefings Bioinform., 2022
Multi-modal chemical information reconstruction from images and texts for exploring the near-drug space.
Briefings Bioinform., 2022
e-TSN: an interactive visual exploration platform for target-disease knowledge mapping from literature.
Briefings Bioinform., 2022
2021
ePharmer: An integrated and graphical software for pharmacophore-based virtual screening.
J. Comput. Chem., 2021
2020
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data.
Nucleic Acids Res., 2020
Computational Insight into the Allosteric Activation Mechanism of Farnesoid X Receptor.
J. Chem. Inf. Model., 2020
2019
Pharmacodynamics simulation of HOEC by a computational model of arachidonic acid metabolic network.
Quant. Biol., 2019
eSHAFTS: Integrated and graphical drug design software based on 3D molecular similarity.
J. Comput. Chem., 2019
2017
Statistical Analysis, Investigation, and Prediction of the Water Positions in the Binding Sites of Proteins.
J. Chem. Inf. Model., July, 2017
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database.
Nucleic Acids Res., 2017
2016
Enhancing the Enrichment of Pharmacophore-Based Target Prediction for the Polypharmacological Profiles of Drugs.
J. Chem. Inf. Model., 2016
Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors.
BMC Bioinform., 2016
2015
An Accurate Metalloprotein-Specific Scoring Function and Molecular Docking Program Devised by a Dynamic Sampling and Iteration Optimization Strategy.
J. Chem. Inf. Model., 2015
2014
J. Cheminformatics, 2014
2013
SimG: An Alignment Based Method for Evaluating the Similarity of Small Molecules and Binding Sites.
J. Chem. Inf. Model., 2013
An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis.
BMC Bioinform., 2013
Bioinform., 2013
ChemMapper: a versatile web server for exploring pharmacology and chemical structure association based on molecular 3D similarity method.
Bioinform., 2013
2011
SHAFTS: A Hybrid Approach for 3D Molecular Similarity Calculation. 1. Method and Assessment of Virtual Screening.
J. Chem. Inf. Model., 2011
Identification of Inhibitors against p90 Ribosomal S6 Kinase 2 (RSK2) through Structure-Based Virtual Screening with the Inhibitor-Constrained Refined Homology Model.
J. Chem. Inf. Model., 2011
2010
PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach.
Nucleic Acids Res., 2010
Bioactive Conformational Generation of Small Molecules: A Comparative Analysis between Force-Field and Multiple Empirical Criteria Based Methods.
BMC Bioinform., 2010
2009
Optimizing Energy Potential for Protein Fold Recognition with Parametric Evaluation Function.
J. Comput. Biol., 2009
J. Comput. Aided Mol. Des., 2009
Cyndi: a multi-objective evolution algorithm based method for bioactive molecular conformational generation.
BMC Bioinform., 2009
An effective docking strategy for virtual screening based on multi-objective optimization algorithm.
BMC Bioinform., 2009
2008
PLoS Comput. Biol., 2008
An Improved PMF Scoring Function for Universally Predicting the Interactions of a Ligand with Protein, DNA, and RNA.
J. Chem. Inf. Model., 2008
BMC Bioinform., 2008
2006
Nucleic Acids Res., 2006