Hongjie Wu

Orcid: 0009-0007-3203-1521

According to our database1, Hongjie Wu authored at least 91 papers between 2008 and 2025.

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Bibliography

2025
LinFa-Q: Accurate Q-learning with linear function approximation.
Neurocomputing, 2025

2024
Euclidean Distance is Not Your Swiss Army Knife.
IEEE Trans. Knowl. Data Eng., December, 2024

MultiModRLBP: A Deep Learning Approach for Multi-Modal RNA-Small Molecule Ligand Binding Sites Prediction.
IEEE J. Biomed. Health Informatics, August, 2024

GTAMP-DTA: Graph transformer combined with attention mechanism for drug-target binding affinity prediction.
Comput. Biol. Chem., February, 2024

AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism.
Neural Networks, January, 2024

Self-supervised Domain Adaptation with Significance-Oriented Masking for Pelvic Organ Prolapse detection.
Pattern Recognit. Lett., 2024

AMDGT: Attention aware multi-modal fusion using a dual graph transformer for drug-disease associations prediction.
Knowl. Based Syst., 2024

Drug repositioning by multi-aspect heterogeneous graph contrastive learning and positive-fusion negative sampling strategy.
Inf. Fusion, 2024

Diffusion Posterior Proximal Sampling for Image Restoration.
Proceedings of the 32nd ACM International Conference on Multimedia, MM 2024, Melbourne, VIC, Australia, 28 October 2024, 2024

Protein Manufacture: Protein Design Assisted by Machine Learning from Backbone to Sequence.
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024

Feature Extraction Approach for Predicting Protein-DNA Binding Residues Using Transformer Encoder-Decoder Architecture.
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024

2023
DeepMPSF: A Deep Learning Network for Predicting General Protein Phosphorylation Sites Based on Multiple Protein Sequence Features.
J. Chem. Inf. Model., November, 2023

DNA protein binding recognition based on lifelong learning.
Comput. Biol. Medicine, September, 2023

Extracting biomedical relation from cross-sentence text using syntactic dependency graph attention network.
J. Biomed. Informatics, August, 2023

Reinforcement Learning in Few-Shot Scenarios: A Survey.
J. Grid Comput., June, 2023

Pure graph-guided multi-view subspace clustering.
Pattern Recognit., April, 2023

Simultaneous Prediction of Interaction Sites on the Protein and Peptide Sides of Complexes through Multilayer Graph Convolutional Networks.
J. Chem. Inf. Model., April, 2023

Protein-DNA Binding Residues Prediction Using a Deep Learning Model With Hierarchical Feature Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

MV-H-RKM: A Multiple View-Based Hypergraph Regularized Restricted Kernel Machine for Predicting DNA-Binding Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Preserving Local and Global Information: An Effective Metric-based Subspace Clustering.
Proceedings of the 31st ACM International Conference on Multimedia, 2023

ST-CA YOLOv5: Improved YOLOv5 Based on Swin Transformer and Coordinate Attention for Surface Defect Detection.
Proceedings of the International Joint Conference on Neural Networks, 2023

Drug-Target Interaction Prediction Based on Interpretable Graph Transformer Model.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

A Transformer-Based Deep Learning Approach with Multi-layer Feature Processing for Accurate Prediction of Protein-DNA Binding Residues.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

Deep Learning-Based Prediction of Drug-Target Binding Affinities by Incorporating Local Structure of Protein.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

Attribute-Based Searchable Encryption Scheme in Smart Healthcare Blockchain.
Proceedings of the IEEE International Conference on Data Mining, 2023

Metric Multi-View Graph Clustering.
Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence, 2023

2022
G Protein-Coupled Receptor Interaction Prediction Based on Deep Transfer Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

SemanticCAP: Chromatin Accessibility Prediction Enhanced by Features Learning from a Language Model.
CoRR, 2022

Multi-view Subspace Clustering on Topological Manifold.
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Using Deep Learning to Predict Transcription Factor Binding Sites Based on Multiple-omics Data.
Proceedings of the Intelligent Computing Theories and Application, 2022

Comprehensive Evaluation of BERT Model for DNA-Language for Prediction of DNA Sequence Binding Specificities in Fine-Tuning Phase.
Proceedings of the Intelligent Computing Theories and Application, 2022

An Effective Method for Yemeni License Plate Recognition Based on Deep Neural Networks.
Proceedings of the Intelligent Computing Methodologies - 18th International Conference, 2022

Local Feature for Visible-Thermal PReID Based on Transformer.
Proceedings of the Intelligent Computing Theories and Application, 2022

Protein-Ligand Binding Affinity Prediction Based on Deep Learning.
Proceedings of the Intelligent Computing Theories and Application, 2022

Drug-Target Interaction Prediction Based on Transformer.
Proceedings of the Intelligent Computing Theories and Application, 2022

Drug-Target Interaction Prediction Based on Graph Neural Network and Recommendation System.
Proceedings of the Intelligent Computing Theories and Application, 2022

Study on Path Planning of Multi-storey Parking Lot Based on Combined Loss Function.
Proceedings of the Intelligent Computing Methodologies - 18th International Conference, 2022

2021
Empirical Potential Energy Function Toward ab Initio Folding G Protein-Coupled Receptors.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Flower growth status recognition method based on feature fusion convolutional neural network.
J. Comput. Methods Sci. Eng., 2021

Research on RNA secondary structure predicting via bidirectional recurrent neural network.
BMC Bioinform., 2021

Multi-zone Residential HVAC Control with Satisfying Occupants' Thermal Comfort Requirements and Saving Energy via Reinforcement Learning.
Proceedings of the Parallel and Distributed Computing, Applications and Technologies, 2021

Automatic Cataract Detection with Multi-Task Learning.
Proceedings of the International Joint Conference on Neural Networks, 2021

Super-Large Medical Image Storage and Display Technology Based on Concentrated Points of Interest.
Proceedings of the Intelligent Computing Theories and Application, 2021

Using Deep Learning to Predict Transcription Factor Binding Sites Combining Raw DNA Sequence, Evolutionary Information and Epigenomic Data.
Proceedings of the Intelligent Computing Theories and Application, 2021

Serialized Local Feature Representation Learning for Infrared-Visible Person Re-identification.
Proceedings of the Intelligent Computing Theories and Application, 2021

Membrane Protein Identification via Multiple Kernel Fuzzy SVM.
Proceedings of the Intelligent Computing Theories and Application, 2021

Research on RNA Secondary Structure Prediction Based on MLP.
Proceedings of the Intelligent Computing Theories and Application, 2021

Plant Leaf Recognition Network Based on Fine-Grained Visual Classification.
Proceedings of the Intelligent Computing Theories and Application, 2021

DNA-Binding Protein Prediction Based on Deep Learning Feature Fusion.
Proceedings of the Intelligent Computing Theories and Application, 2021

A Reinforcement Learning-Based Model for Human MicroRNA-Disease Association Prediction.
Proceedings of the Intelligent Computing Theories and Application, 2021

Depth Factor Decomposition Machine Based on Multi-kernel Convolutional Neural Network for Click-Through Rate Prediction.
Proceedings of the BDE 2021: The 3rd International Conference on Big Data Engineering, Shanghai, China, May 29, 2021

2020
A Building Energy Consumption Prediction Method Based on Integration of a Deep Neural Network and Transfer Reinforcement Learning.
Int. J. Pattern Recognit. Artif. Intell., 2020

Predicting in-Vitro Transcription Factor Binding Sites with Deep Embedding Convolution Network.
Proceedings of the Intelligent Computing Theories and Application, 2020

Random Occlusion Recovery with Noise Channel for Person Re-identification.
Proceedings of the Intelligent Computing Theories and Application, 2020

Plant Leaf Recognition Network Based on Feature Learning and Metric Learning.
Proceedings of the Intelligent Computing Theories and Application, 2020

Position Attention-Guided Learning for Infrared-Visible Person Re-identification.
Proceedings of the Intelligent Computing Theories and Application, 2020

A New Method Combining DNA Shape Features to Improve the Prediction Accuracy of Transcription Factor Binding Sites.
Proceedings of the Intelligent Computing Theories and Application, 2020

License Plate Detection and Recognition Technology for Complex Real Scenarios.
Proceedings of the Intelligent Computing Theories and Application, 2020

Prediction of Membrane Protein Interaction Based on Deep Residual Learning.
Proceedings of the Intelligent Computing Theories and Application, 2020

Three-Layer Dynamic Transfer Learning Language Model for E. Coli Promoter Classification.
Proceedings of the Intelligent Computing Theories and Application, 2020

2019
一种基于生成对抗网络的强化学习算法 (Reinforcement Learning Algorithm Based on Generative Adversarial Networks).
计算机科学, 2019

The prediction of foundation pit based on genetic back propagation neural network.
J. Comput. Methods Sci. Eng., 2019

Variational Bayesian Exploration-Based Active Sarsa Algorithm.
Int. J. Pattern Recognit. Artif. Intell., 2019

Multi-threading parallel reinforcement learning.
Int. J. Comput. Appl. Technol., 2019

Research on predicting 2D-HP protein folding using reinforcement learning with full state space.
BMC Bioinform., 2019

Ranking near-native candidate protein structures via random forest classification.
BMC Bioinform., 2019

Predicting RNA secondary structure via adaptive deep recurrent neural networks with energy-based filter.
BMC Bioinform., 2019

A Prediction Method of DNA-Binding Proteins Based on Evolutionary Information.
Proceedings of the Intelligent Computing Theories and Application, 2019

Research on RNA Secondary Structure Prediction Based on Decision Tree.
Proceedings of the Intelligent Computing Theories and Application, 2019

Knowledge Based Helix Angle and Residue Distance Restraint Free Energy Terms of GPCRs.
Proceedings of the Intelligent Computing Theories and Application, 2019

2018
Unified Deep Learning Architecture for Modeling Biology Sequence.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

A study on multi-dimension error compensation and application to the foundation pit monitoring.
J. Comput. Methods Sci. Eng., 2018

A Sarsa-based adaptive controller for building energy conservation.
J. Comput. Methods Sci. Eng., 2018

Single Trajectory Learning: Exploration Versus Exploitation.
Int. J. Pattern Recognit. Artif. Intell., 2018

Probing the functions of long non-coding RNAs by exploiting the topology of global association and interaction network.
Comput. Biol. Chem., 2018

Optimizing HP Model Using Reinforcement Learning.
Proceedings of the Intelligent Computing Theories and Application, 2018

RNA Secondary Structure Prediction Based on Long Short-Term Memory Model.
Proceedings of the Intelligent Computing Theories and Application, 2018

Optimizing GPCR Two-Dimensional Topology from Contact Map.
Proceedings of the Intelligent Computing Methodologies - 14th International Conference, 2018

Prediction of Indoor PM2.5 Index Using Genetic Neural Network Model.
Proceedings of the Intelligent Computing Theories and Application, 2018

2017
An SDN-Based Flow Control Mechanism for Guaranteeing QoS and Maximizing Throughput.
Wirel. Pers. Commun., 2017

Deep Conditional Random Field Approach to Transmembrane Topology Prediction and Application to GPCR Three-Dimensional Structure Modeling.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

β-Barrel Transmembrane Protein Predicting Using Support Vector Machine.
Proceedings of the Intelligent Computing Methodologies - 13th International Conference, 2017

2016
A Parallel Multiple K-Means Clustering and Application on Detect Near Native Model.
Proceedings of the Intelligent Computing Theories and Application, 2016

Modeling of fuzzy comprehensive evaluation based on cloud model.
Proceedings of the 14th International Conference on Control, 2016

2015
CRF-TM: A Conditional Random Field Method for Predicting Transmembrane Topology.
Proceedings of the Intelligence Science and Big Data Engineering. Big Data and Machine Learning Techniques, 2015

Predicting Helix Boundaries of α-Helix Transmembrane Protein with Feedback Conditional Random Fields.
Proceedings of the Intelligent Computing Theories and Methodologies, 2015

2014
Improved packing of protein side chains with parallel ant colonies.
BMC Bioinform., 2014

2013
patGPCR: A Multitemplate Approach for Improving 3D Structure Prediction of Transmembrane Helices of G-Protein-Coupled Receptors.
Comput. Math. Methods Medicine, 2013

A parallel ant colonies approach to de novo prediction of protein backbone in CASP8/9.
Sci. China Inf. Sci., 2013

2011
Battery-Management System (BMS) and SOC Development for Electrical Vehicles.
IEEE Trans. Veh. Technol., 2011

2008
Prognostic and Warning System for Power-Electronic Modules in Electric, Hybrid Electric, and Fuel-Cell Vehicles.
IEEE Trans. Ind. Electron., 2008


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