Hong Cui

According to our database, Hong Cui authored at least 48 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

PenLab: Towards Understanding of Active Collaboration for Solid Geometry Teaching.

Dehui Kong, Hongyue Wang, Sijie Zhou, Hong Cui, Zhiquan Feng

Proceedings of the Extended Abstracts of the CHI Conference on Human Factors in Computing Systems, 2024

2023

MAG: a smart gloves system based on multimodal fusion perception.

Hong Cui, Zhiquan Feng, Jinglan Tian, Dehui Kong, Zishuo Xia, Weina Li

CCF Trans. Pervasive Comput. Interact., December, 2023

From Noisy Data to Useful Color Palettes: One Step in Making Biodiversity Data FAIR.

Hong Cui, Noah Giebink, Julian R. Starr, Dylan Longert, Bruce Ford, Étienne Léveillé-Bourret

Proceedings of the Information for a Better World: Normality, Virtuality, Physicality, Inclusivity, 2023

2022

Authors' attitude toward adopting a new workflow to improve the computability of phenotype publications.

Hong Cui, Bruce Ford, Julian R. Starr, Anton Reznicek, Limin Zhang, James A. Macklin

Database J. Biol. Databases Curation, 2022

2021

P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma.

Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang

Comput. Math. Methods Medicine, 2021

Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study.

Limin Zhang, Xingyi Yang, Zuleima Cota, Hong Cui, Bruce Ford, Hsin-liang Oliver Chen, James A. Macklin, Anton Reznicek, Julian R. Starr

Database J. Biol. Databases Curation, 2021

Internet of Samples.

Stephen M. Richard, David Vieglais, Hong Cui, Neil Davies, John Deck, Quan Gan, Eric C. Kansa, Sarah Whitcher Kansa, John A. Kunze, Danny Mandel, Christopher Meyer, Thomas Orrell, Sarah Ramdeen, Rebecca Snyder, Ramona L. Walls, Yuxuan Zhou, Kerstin A. Lehnert

Proceedings of the Information: Equity, Diversity, Inclusion, Justice, and Relevance, 2021

A Peek into the US Informal STEM Landscape through Theconnectory.org.

Sebastian Deimen, Hong Cui, Michelle Higgins

Proceedings of the Information: Equity, Diversity, Inclusion, Justice, and Relevance, 2021

2020

Innovative UX Methods for Information Access Based on Interdisciplinary Approaches: Practical Lessons from Academia and Industry.

Fei Yu, Laura Ruel, Ryan Tyler, Qian Xu, Hong Cui, Stan Karanasios, Ba Xuan Nguyen, Anna Keilbach, Javed Mostafa

Data Inf. Manag., 2020

Enabling Authors to Produce Computable Phenotype Measurements: Usability Studies on the Measurement Recorder.

Limin Zhang, Hong Cui, Bruce Ford, Hsin-liang Cheng, James A. Macklin, Anton Reznicek, Julian R. Starr

Proceedings of the HCI International 2020 - Late Breaking Posters, 2020

2019

Developing community phenotype ontologies: Understanding users' preferences.

Limin Zhang, Zuleima Cota, Hong Cui, Hsin-liang Oliver Chen, Bruce Ford, Joel Sach, Jocelyn E. Pender, James A. Macklin, Anton Reznicek, Julian R. Starr

Proceedings of the Information... Anyone, Anywhere, Any Time, Any Way, 2019

2018

Accelerating the Large-Scale Study of Prokaryotic Phenotypes and Niche Space Evolution Through Time Using the MicrO Ontology, MicroPIE, and MicroPIEDigester Software.

Carrine E. Blank, Hong Cui, Jin Mao, Lisa R. Moore, Robert W. Thacker, Ramona L. Walls

Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

Identifying bacterial biotope entities using sequence labeling: Performance and feature analysis.

Jin Mao, Hong Cui

J. Assoc. Inf. Sci. Technol., 2018

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.

Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee

Database J. Biol. Databases Curation, 2018

Where Are iSchools Heading?

Vikas Yadav, Farig Sadeque, P. Bryan Heidorn, Hong Cui

Proceedings of the Transforming Digital Worlds - 13th International Conference, 2018

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants.

Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

Using Shallow Semantic Analysis to Implement Automated Quality Assessment of Web Health Care Information.

Yanjun Zhang, Robert E. Mercer, Jacquelyn A. Burkell, Hong Cui

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2018

2016

Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources.

Jin Mao, Lisa R. Moore, Carrine E. Blank, Elvis Hsin-Hui Wu, Marcia Ackerman, Sonali Ranade, Hong Cui

BMC Bioinform., 2016

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.

Hong Cui, Dongfang Xu, Steven S. Chong, Martin Ramirez, Thomas Rodenhausen, James A. Macklin, Bertram Ludäscher, Robert A. Morris, Eduardo M. Soto, Nicolás Mongiardino Koch

BMC Bioinform., 2016

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.

Carrine E. Blank, Hong Cui, Lisa R. Moore, Ramona L. Walls

J. Biomed. Semant., 2016

MultiLayerMatrix: Visualizing Large Taxonomic Datasets.

Dang Tuan Nhon, Hong Cui, Angus G. Forbes

Proceedings of the 7th International EuroVis Workshop on Visual Analytics, 2016

2015

OTO: Ontology Term Organizer.

Fengqiong Huang, James A. Macklin, Hong Cui, Heather A. Cole, Lorena Endara

BMC Bioinform., 2015

CharaParser+EQ: Performance evaluation without gold standard.

Hong Cui, Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Paula M. Mabee, James P. Balhoff, Hariharan Gopalakrishnan

Proceedings of the Information Science with Impact: Research in and for the Community, 2015

2014

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.

Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel

J. Biomed. Semant., 2014

2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert J. Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila M. Dahdul, Paula M. Mabee, Donghui Li, Bethany R. Harris, Marc Gillespie, Silvia Jimenez, Phoebe M. Roberts, Lisa Matthews, Kevin G. Becker, Harold J. Drabkin, Susan M. Bello, Luana Licata, Andrew Chatr-aryamontri, Mary L. Schaeffer, Julie Park, Melissa A. Haendel, Kimberly Van Auken, Yuling Li, Juancarlos Chan, Hans-Michael Müller, Hong Cui, James P. Balhoff, Chi-Yang Wu, Zhiyong Lu, Chih-Hsuan Wei, Catalina O. Tudor, Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan, Juan Miguel Cejuela, Pratibha Dubey, Cathy H. Wu

Database J. Biol. Databases Curation, 2013

2012

CharaParser for fine-grained semantic annotation of organism morphological descriptions.

Hong Cui

J. Assoc. Inf. Sci. Technol., 2012

Applications of Natural Language Processing in Biodiversity Science.

Anne E. Thessen, Hong Cui, Dmitry Mozzherin

Adv. Bioinformatics, 2012

Evaluating the botanical coverage of PATO using an unsupervised learning algorithm.

Alyssa Janning, Hong Cui

Proceedings of the iConference 2012, Toronto, Ontario, Canada, February 7-10, 2012, 2012

Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources.

Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

OTO: Ontology term organizer.

Fengqiong Huang, James A. Macklin, Paul J. Morris, Partha Pratim Sanyal, Robert A. Morris, Hong Cui

Proceedings of the Information, Interaction, Innovation: Celebrating the Past, Constructing the Present and Creating the Future, 2012

2011

Combine unsupervised learning and heuristic rules to annotate organism morphological descriptions.

Hong Cui, Sriramu Singaram, Alyssa Janning

Proceedings of the Bridging the Gulf: Communication and Information in Society, Technology, and Work, 2011

2010

Semantic annotation of biosystematics literature without training examples.

Hong Cui, David Boufford, Paul Selden

J. Assoc. Inf. Sci. Technol., 2010

Competency evaluation of plant character ontologies against domain literature.

Hong Cui

J. Assoc. Inf. Sci. Technol., 2010

Semantic annotation of morphological descriptions: an overall strategy.

Hong Cui

BMC Bioinform., 2010

Tools for Semantic Annotation of Taxonomic Descriptions.

Hong Cui, Partha Pratim Sanyal, Chunshui Yu

Proceedings of the Knowledge-Based and Intelligent Information and Engineering Systems, 2010

From text to RDF triple store: An application for biodiversity literature.

Hong Cui, Kenneth (Yang) Jiang, Partha Pratim Sanyal

Proceedings of the Navigating Streams in an Information Ecosystem, 2010

Unsupervised extraction of text segments from heterogeneous document collections.

Hong Cui

Proceedings of the Navigating Streams in an Information Ecosystem, 2010

2009

An Application for Semantic Markup of Biodiversity Documents.

Hong Cui

Bull. IEEE Tech. Comm. Digit. Libr., 2009

Intelligent feature extraction and knowledge mining by multivariate analyses.

Yisong Chen, Hong Cui

Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, 2009

Application of semantic annotation for quality insurance in biosystematics publishing.

Hong Cui, Chunshui Yu, James A. Macklin

Proceedings of the Thriving on Diversity: Information Opportunities in a Pluralistic World, 2009

2008

Unsupervised semantic markup of literature for biodiversity digital libraries.

Hong Cui

Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2008

2007

Unsupervised Structure Discovery for Biodiversity Information.

Hong Cui, Richard M. McCourt, Monique Feist

Bull. IEEE Tech. Comm. Digit. Libr., 2007

The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions.

Hong Cui, P. Bryan Heidorn

J. Assoc. Inf. Sci. Technol., 2007

2006

Automated concept discovery in corpora of morphological descriptions.

Hong Cui, Richard M. McCourt, Monique Feist

Proceedings of the Information Realities: Shaping the Digital Future for All, 2006

2005

Automating Semantic Markup of Semi-Structured Text via an Induced Knowledge Base: A Case Study Using Floras

Hong Cui

PhD thesis, 2005

How Do Search Engines Handle Chinese Queries?

Haidar Moukdad, Hong Cui

Webology, 2005

MARTT: Using induced knowledge base to automatically mark up plant taxonomic descriptions with XML.

Hong Cui

Proceedings of the Sparking Synergies: Bringing Research and Practice Together, 2005

2002

An approach to automatic classification of text for information retrieval.

Hong Cui, P. Bryan Heidorn, Hong Zhang

Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2002