Hiroyuki Toh

According to our database, Hiroyuki Toh authored at least 23 papers between 1997 and 2019.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2019

Phylogenetic Footprinting.

Hiroyuki Toh

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

2018

Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment.

Atsuko Yamaguchi, Hiroyuki Toh

Proceedings of the Semantic Technology - 8th Joint International Conference, 2018

2016

Profile comparison revealed deviation from structural constraint at the positively selected sites.

Hiroyuki Oda, Motonori Ota, Hiroyuki Toh

Biosyst., 2016

2011

DROP: an SVM domain linker predictor trained with optimal features selected by random forest.

Teppei Ebina, Hiroyuki Toh, Yutaka Kuroda

Bioinform., 2011

2010

Relative von Neumann Entropy for Evaluating amino acid conservation.

Fredrik Johansson, Hiroyuki Toh

J. Bioinform. Comput. Biol., 2010

A comparative study of conservation and variation scores.

Fredrik Johansson, Hiroyuki Toh

BMC Bioinform., 2010

<i>SeSAW</i>: balancing sequence and structural information in protein functional mapping.

Daron M. Standley, Reiko Yamashita, Akira R. Kinjo, Hiroyuki Toh, Haruki Nakamura

Bioinform., 2010

Parallelization of the MAFFT multiple sequence alignment program.

Kazutaka Katoh, Hiroyuki Toh

Bioinform., 2010

2008

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.

Kazutaka Katoh, Hiroyuki Toh

BMC Bioinform., 2008

Recent developments in the MAFFT multiple sequence alignment program.

Kazutaka Katoh, Hiroyuki Toh

Briefings Bioinform., 2008

2007

ASH structure alignment package: Sensitivity and selectivity in domain classification.

Daron M. Standley, Hiroyuki Toh, Haruki Nakamura

BMC Bioinform., 2007

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.

Kazutaka Katoh, Hiroyuki Toh

Bioinform., 2007

Inference of Protein-Protein Interactions by Using Co-evolutionary Information.

Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh

Proceedings of the Algebraic Biology, Second International Conference, 2007

2006

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.

Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh

Bioinform., 2006

2005

ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.

Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto

Nucleic Acids Res., 2005

GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures.

Daron M. Standley, Hiroyuki Toh, Haruki Nakamura

BMC Bioinform., 2005

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.

Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh

Bioinform., 2005

2004

ASIAN: a website for network inference.

Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto

Bioinform., 2004

2003

Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.

Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto

Signal Process., 2003

2002

Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.

Hiroyuki Toh, Katsuhisa Horimoto

Bioinform., 2002

2001

Statistical estimation of cluster boundaries in gene expression profile data.

Katsuhisa Horimoto, Hiroyuki Toh

Bioinform., 2001

1998

A method for comparing circular genomes from gene locations: application to mitochondrial genomes.

Katsuhisa Horimoto, Mikita Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka

Bioinform., 1998

1997

Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm.

Hiroyuki Toh

Comput. Appl. Biosci., 1997