Hiroyuki Kuwahara
Orcid: 0000-0001-5333-6729
According to our database1,
Hiroyuki Kuwahara
authored at least 26 papers
between 2006 and 2022.
Collaborative distances:
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Bibliography
2022
Bioinform., 2022
2021
Stable maintenance of hidden switches as a strategy to increase the gene expression stability.
Nat. Comput. Sci., 2021
Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach.
J. Cheminformatics, 2021
2019
Promoter analysis and prediction in the human genome using sequence-based deep learning models.
Bioinform., 2019
Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions.
Bioinform., 2019
2018
2017
Learning gene regulatory networks from gene expression data using weighted consensus.
Neurocomputing, 2017
Sequence2Vec: a novel embedding approach for modeling transcription factor binding affinity landscape.
Bioinform., 2017
Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data.
Bioinform., 2017
2016
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.
Nucleic Acids Res., 2016
2015
Parameter estimation methods for gene circuit modeling from time-series mRNA data: a comparative study.
Briefings Bioinform., 2015
Compare local pocket and global protein structure models by small structure patterns.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015
2014
Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels.
BMC Syst. Biol., 2014
2013
A framework for scalable parameter estimation of gene circuit models using structural information.
Bioinform., 2013
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
An efficient parallel stochastic simulation method for analysis of nonviral gene delivery systems.
Proceedings of the Computational Methods in Systems Biology, 9th International Conference, 2011
Erlang-delayed stochastic chemical kinetic formalism for efficient analysis of biological systems with non-elementary reaction effects.
Proceedings of the ACM International Conference on Bioinformatics, 2011
2010
Temperature Control of Fimbriation Circuit Switch in Uropathogenic <i>Escherichia coli</i>: Quantitative Analysis via Automated Model Abstraction.
PLoS Comput. Biol., 2010
2009
Proceedings of the 2009 International Conference on Computer-Aided Design, 2009
2008
Model Abstraction and Temporal Behavior Analysis of Genetic Regulatory Networks.
PhD thesis, 2008
Development of "Souryu-IV" and "Souryu-V: " Serially connected crawler vehicles for in-rubble searching operations.
J. Field Robotics, 2008
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions.
J. Comput. Biol., 2008
2007
Proceedings of the 13th IEEE International Symposium on Asynchronous Circuits and Systems (ASYNC 2007), 2007
2006
Trans. Comp. Sys. Biology, 2006
Abstracted Stochastic Analysis of Type 1 Pili Expression in E.coli.
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006