Hiroshi Masuya

According to our database, Hiroshi Masuya authored at least 32 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Homeostasis imbalance process ontology: a study on COVID-19 infectious processes.

Yuki Yamagata, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya

BMC Medical Informatics Decis. Mak., January, 2024

2023

Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets.

Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process Ontology.

Yuki Yamagata, Shuichi Onami, Hiroshi Masuya

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

Ontology Integration for Discovering Bioresources Contributing to Medical Science Research.

Tatsuya Kushida, Daiki Usuda, Toyoyuki Takada, Yuki Yamagata, Hiroshi Masuya

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

A Community Effort for COVID-19 Ontology Harmonization.

Asiyah Yu Lin, Yuki Yamagata, William D. Duncan, Leigh C. Carmody, Tatsuya Kushida, Hiroshi Masuya, John Beverley, Biswanath Dutta, Michael DeBellis, Zoë May Pendlington, Paola Roncaglia, Yongqun He

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020

Soft windowing application to improve analysis of high-throughput phenotyping data.

Hamed Haselimashhadi, Jeremy C. Mason, Violeta Muñoz-Fuentes, Federico López-Gómez, Kolawole O. Babalola, Elif F. Acar, Vivek Kumar, Jacqui White, Ann M. Flenniken, Ruairidh King, Ewan Straiton, John Richard Seavitt, Angelina Gaspero, Arturo Garza, Audrey E. Christianson, Chih-Wei Hsu, Corey L. Reynolds, Denise G. Lanza, Isabel Lorenzo, Jennie R. Green, Juan J. Gallegos, Ritu Bohat, Rodney C. Samaco, Surabi Veeraragavan, Jong Kyoung Kim, Gregor Miller, Helmut Fuchs, Lillian Garrett, Lore Becker, Yeon Kyung Kang, David Clary, Soo Young Cho, Masaru Tamura, Nobuhiko Tanaka, Kyung Dong Soo, Alexandr Bezginov, Ghina Bou About, Marie-France Champy, Laurent Vasseur, Sophie Leblanc, Hamid Meziane, Mohammed Selloum, Patrick T. Reilly, Nadine Spielmann, Holger Maier, Valérie Gailus-Durner, Tania Sorg, Hiroshi Masuya, Yuichi Obata, Jason D. Heaney, Mary E. Dickinson, Wolfgang Wurst, Glauco P. Tocchini-Valentini, Kevin C. Kent Lloyd, Colin McKerlie, Je Kyung Seong, Yann Herault, Martin Hrabé de Angelis, Steve D. M. Brown, Damian Smedley, Paul Flicek, Ann-Marie Mallon, Helen E. Parkinson, Terrence F. Meehan

Bioinform., 2020

2018

RIKEN MetaDatabase: A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud.

Norio Kobayashi, Satoshi Kume, Kai Lenz, Hiroshi Masuya

Int. J. Semantic Web Inf. Syst., 2018

2017

LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences.

Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase.

Norio Kobayashi, Satoshi Kume, Hiroshi Masuya

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Semantic Graph Analysis for Federated LOD Surfing in Life Sciences.

Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the Semantic Technology - 7th Joint International Conference, 2017

Development of Semantic Web-Based Imaging Database for Biological Morphome.

Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi

Proceedings of the Semantic Technology - 7th Joint International Conference, 2017

2016

SPARQL Query Construction with Monitoring Service for Endpoints.

Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

A RDF based Portal of Biological Phenotype Data produced in Japan.

Terue Takatsuki, Mikako Saito, Sadahiro Kumagai, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Norio Kobayashi, Hiroshi Masuya

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

RIKEN MetaDatabase: a Database Publication Platform for RIKENs Life-science Researchers that Promotes Research Collaborations over Different Research Area.

Kai Lenz, Hiroshi Masuya, Norio Kobayashi

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data.

Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi

Proceedings of the ISWC 2016 Posters & Demonstrations Track co-located with 15th International Semantic Web Conference (ISWC 2016), 2016

SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the Workshop and Poster Proceedings of the 6th Joint International Semantic Technology Conference co-located with the 6th Joint International Semantic Technology Conference (JIST 2016), 2016

Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data.

Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi

Proceedings of the Semantic Technology - 6th Joint International Conference, 2016

RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences.

Norio Kobayashi, Kai Lenz, Hiroshi Masuya

Proceedings of the Workshop and Poster Proceedings of the 6th Joint International Semantic Technology Conference co-located with the 6th Joint International Semantic Technology Conference (JIST 2016), 2016

2015

RDF-based Data Sharing of Bio-resource Related Information.

Hiroshi Masuya, Terue Takatsuki, Mikako Saito, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Hiroshi Mori, Shuichi Kawashima, Norio Kobayashi

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web.

Norio Kobayashi, Kai Lenz, Hiroshi Masuya

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014

CLO: The cell line ontology.

Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He

J. Biomed. Semant., 2014

2013

PosMed: ranking genes and bioresources based on Semantic Web Association Study.

Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda

Nucleic Acids Res., 2013

PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web.

Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

2012

An Ontology of Gene.

Hiroshi Masuya, Riichiro Mizoguchi

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Development of Linked Open Data for Bioresources.

Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata

Proceedings of the Semantic Technology, Second Joint International Conference, 2012

2011

The RIKEN integrated database of mammals.

Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda

Nucleic Acids Res., 2011

An Advanced Strategy for Integration of Biological Measurement Data.

Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

SDOP-DB: a comparative standardized-protocol database for mouse phenotypic analyses.

Nobuhiko Tanaka, Kazunori Waki, Hideki Kaneda, Tomohiro Suzuki, Ikuko Yamada, Tamio Furuse, Kimio Kobayashi, Hiromi Motegi, Hideaki Toki, Maki Inoue, Osamu Minowa, Tetsuo Noda, Keizo Takao, Tsuyoshi Miyakawa, Aki Takahashi, Tsuyoshi Koide, Shigeharu Wakana, Hiroshi Masuya

Bioinform., 2010

2009

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.

Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda

Nucleic Acids Res., 2009

2008

Objective Evaluation Measures of Genetic Marker Selection in Large-Scale SNP genotyping.

Eli Kaminuma, Hiroshi Masuya, Ikuo Miura, Hiromi Motegi, Kenzi R. Takahasi, Miki Nakazawa, Minami Matsui, Yoichi Gondo, Tetsuo Noda, Toshihiko Shiroishi, Shigeharu Wakana, Tetsuro Toyoda

J. Bioinform. Comput. Biol., 2008

2007

Phenosite: a Web Database Integrating the mouse phenotyping Platform and the Experimental Procedures in mice.

Hiroshi Masuya, Sumi Yoshikawa, Naohiko Heida, Tetsuro Toyoda, Shigeharu Wakana, Toshihiko Shiroishi

J. Bioinform. Comput. Biol., 2007