Hironori Kokubo

According to our database, Hironori Kokubo authored at least 7 papers between 2010 and 2020.

Collaborative distances:

• Dijkstra number of six.
• Erdős number of five.

2020

Prediction of ligand binding mode among multiple cross-docking poses by molecular dynamics simulations.

Kai Liu, Hironori Kokubo

J. Comput. Aided Mol. Des., 2020

2019

Uncovering abnormal changes in logP after fluorination using molecular dynamics simulations.

Kai Liu, Hironori Kokubo

J. Comput. Aided Mol. Des., 2019

2017

Exploring the Stability of Ligand Binding Modes to Proteins by Molecular Dynamics Simulations: A Cross-docking Study.

Kai Liu, Hironori Kokubo

J. Chem. Inf. Model., October, 2017

Exploring the stability of ligand binding modes to proteins by molecular dynamics simulations.

Kai Liu, Etsurou Watanabe, Hironori Kokubo

J. Comput. Aided Mol. Des., 2017

2013

Two-dimensional replica-exchange method for predicting protein-ligand binding structures.

Hironori Kokubo, Toshimasa Tanaka, Yuko Okamoto

J. Comput. Chem., 2013

2011

<i>Ab Initio</i> prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations.

Hironori Kokubo, Toshimasa Tanaka, Yuko Okamoto

J. Comput. Chem., 2011

2010

Dependency of ligand free energy landscapes on charge parameters and solvent models.

Yuko Okamoto, Toshimasa Tanaka, Hironori Kokubo

J. Comput. Aided Mol. Des., 2010