Hideo Matsuda
Orcid: 0000-0002-4701-3779
According to our database1,
Hideo Matsuda
authored at least 57 papers
between 1984 and 2024.
Collaborative distances:
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Bibliography
2024
Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach.
Biosyst., January, 2024
Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines.
Proceedings of the 14th International Conference on Bioscience, 2024
2023
Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data.
Proceedings of the 2023 13th International Conference on Biomedical Engineering and Technology, 2023
Proceedings of the 2023 13th International Conference on Biomedical Engineering and Technology, 2023
2022
Inference of Cell-Cell Communication for Detecting Immune Disease-Associated Signaling Pathways using Single-Cell RNA-seq.
Proceedings of the 9th International Conference on Biomedical and Bioinformatics Engineering, 2022
A Novel Method for Fusion Gene Detection using Both End-Fragment Sequences of Long Reads.
Proceedings of the 9th International Conference on Biomedical and Bioinformatics Engineering, 2022
A Method for Detection of Markers for Epithelial-Mesenchymal Transition based on Single Cell Transcriptomic Data.
Proceedings of the ICBBB 2022: 12th International Conference on Bioscience, Biochemistry and Bioinformatics, Tokyo, Japan, January 7, 2022
2021
Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021
2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads.
J. Bioinform. Comput. Biol., 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019
2018
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.
BMC Bioinform., 2018
Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering.
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018
2017
J. Bioinform. Comput. Biol., 2017
2016
Proceedings of the 23rd International Conference on Pattern Recognition, 2016
Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets.
Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016
2015
Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution.
J. Bioinform. Comput. Biol., 2015
2014
A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue.
Proceedings of the 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images, 2014
Proceedings of the 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images, 2014
2012
Inf. Media Technol., 2012
An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems.
BMC Genom., 2012
2010
Improved Prediction Method for Protein Interactions Using Both Structural and Functional Characteristics of Proteins.
Inf. Media Technol., 2010
2009
Nucleic Acids Res., 2009
2008
BioCompass: A Novel Functional Inference Tool that Utilizes MeSH Hierarchy to Analyze Groups of Genes.
Silico Biol., 2008
2007
Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.
Medical Biol. Eng. Comput., 2007
2005
Designing a Rule-Based Environment to Interoperate Life-Scientific Ontologies for Drug Discovery.
Proceedings of the 2005 IEEE/IPSJ International Symposium on Applications and the Internet Workshops (SAINT 2005 Workshops), 31 January, 2005
Proceedings of the 21st International Conference on Data Engineering Workshops, 2005
Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005
2004
A Challenge towards Next-Generation Research Infrastructure for Advanced Life Science.
New Gener. Comput., 2004
Graph-based clustering for finding distant relationships in a large set of protein sequences.
Bioinform., 2004
Proceedings of the Grid Computing in Life Science, 2004
Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
2003
Proceedings of the Eighth International Conference on Database Systems for Advanced Applications (DASFAA '03), 2003
2002
IEEE Intell. Syst., 2002
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002
An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002
2001
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB).
Nucleic Acids Res., 2001
2000
An efficient procedure for maintaining materialized views on distributed database systems.
Syst. Comput. Jpn., 2000
Quick selection of representative protein chain sets based on customizable requirements.
Bioinform., 2000
Hierarchical Approach to Parallel Tree Search for Protein Conformational Analysis.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2000
A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1999
Classifying Molecular Sequences Using a Linkage Graph With Their Pairwise Similarities.
Theor. Comput. Sci., 1999
1995
High Performance I/O System of the Distributed Shared-Memory Massively Parallel Computer JUMP-1.
Proceedings of the Seventh IASTED/ISMM International Conference on Parallel and Distributed Computing and Systems, 1995
1994
An Application of an OR-Parallel Prolog Systemto Phylogenetic Analysis.
LISP Symb. Comput., 1994
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.
Comput. Appl. Biosci., 1994
Proceedings of the International Symposium on Parallel Architectures, 1994
Proceedings of the 8th international conference on Supercomputing, 1994
1992
Proceedings of the Parallel Symbolic Computing: Languages, 1992
1987
Proceedings of the Database Machines and Knowledge Base Machines, 1987
1986
1985
Proceedings of the Logic Programming '85, 1985
1984
Sequential Prolog Machine PEK.
Proceedings of the International Conference on Fifth Generation Computer Systems, 1984