Herbert M. Sauro

According to our database, Herbert M. Sauro authored at least 69 papers between 1993 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The simulation experiment description markup language (SED-ML): language specification for level 1 version 5.

Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König

J. Integr. Bioinform., 2024

MakeSBML: a tool for converting between Antimony and SBML.

Bartholomew E. Jardine, Lucian P. Smith, Herbert M. Sauro

J. Integr. Bioinform., 2024

2023

Whole-cell metabolic control analysis.

Frank J. Bruggeman, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff

Biosyst., December, 2023

VSCode-Antimony: a source editor for building, analyzing, and translating antimony models.

Steve Ma, Longxuan Fan, Sai Anish Konanki, Eva Liu, John H. Gennari, Lucian P. Smith, Joseph L. Hellerstein, Herbert M. Sauro

Bioinform., December, 2023

Tissue Forge: Interactive biological and biophysics simulation environment.

T. J. Sego, James P. Sluka, Herbert M. Sauro, James A. Glazier

PLoS Comput. Biol., October, 2023

SBcoyote: An extensible Python-based reaction editor and viewer.

Jin Xu, Gary Geng, Nhan D. Nguyen, Carmen Perena-Cortes, Claire Samuels, Herbert M. Sauro

Biosyst., October, 2023

An automated model annotation system (AMAS) for SBML models.

Woosub Shin, John H. Gennari, Joseph L. Hellerstein, Herbert M. Sauro

Bioinform., October, 2023

Cesium: A public database of evolved oscillatory reaction networks.

Lillian T. Tatka, Wesley Luk, Timothy C. Elston, Joseph L. Hellerstein, Herbert M. Sauro

Biosyst., February, 2023

SBMLDiagrams: a python package to process and visualize SBML layout and render.

Jin Xu, Jessie Jiang, Herbert M. Sauro

Bioinform., January, 2023

libRoadRunner 2.0: a high performance SBML simulation and analysis library.

Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König, Kiri Choi, Herbert M. Sauro

Bioinform., January, 2023

2022

SBbadger: biochemical reaction networks with definable degree distributions.

Michael A Kochen, H. Steven Wiley, Song Feng, Herbert M. Sauro

Bioinform., November, 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

CoRR, 2022

2021

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4.

Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König

J. Integr. Bioinform., 2021

Synthetic biology open language visual (SBOL Visual) version 2.3.

Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2021

libOmexMeta: enabling semantic annotation of models to support FAIR principles.

Ciaran M. Welsh, David P. Nickerson, Anand K. Rampadarath, Maxwell Lewis Neal, Herbert M. Sauro, John H. Gennari

Bioinform., 2021

Publishing reproducible dynamic kinetic models.

Veronica Porubsky, Lucian P. Smith, Herbert M. Sauro

Briefings Bioinform., 2021

2020

Improving reproducibility in computational biology research.

Jason A. Papin, Feilim Mac Gabhann, Herbert M. Sauro, David P. Nickerson, Anand K. Rampadarath

PLoS Comput. Biol., 2020

A compiler for biological networks on silicon chips.

J. Kyle Medley, Jonathan J. Y. Teo, Sung Sik Woo, Joseph L. Hellerstein, Rahul Sarpeshkar, Herbert M. Sauro

PLoS Comput. Biol., 2020

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).

Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers

J. Integr. Bioinform., 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2020

libsbmljs - Enabling web-based SBML tools.

J. Kyle Medley, Joseph L. Hellerstein, Herbert M. Sauro

Biosyst., 2020

2019

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat

J. Integr. Bioinform., 2019

Synthetic Biology Open Language (SBOL) Version 2.3.

Curtis Madsen, Ángel Goñi-Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Chris Macklin, James Alastair McLaughlin, Xianwei Meng, Tramy Nguyen, Matthew R. Pocock, Meher Samineni, James Scott-Brown, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal, Michael Bissell, Kevin Clancy, John H. Gennari, Goksel Misirli, Chris J. Myers, Ernst Oberortner, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2019

A Commentary on the Linearity and Time-Invariance of ODE-Based Systems.

Parker S. Ruth, Herbert M. Sauro

CoRR, 2019

Harmonizing semantic annotations for computational models in biology.

Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath

Briefings Bioinform., 2019

2018

Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology.

J. Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph L. Hellerstein, Stuart C. Sealfon, Herbert M. Sauro

PLoS Comput. Biol., 2018

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat

J. Integr. Bioinform., 2018

Synthetic Biology Open Language (SBOL) Version 2.2.0.

Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Jacob Beal, Michael Bissell, Kiri Choi, Kevin Clancy, Raik Grünberg, Chris Macklin, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2018

Tellurium: An extensible python-based modeling environment for systems and synthetic biology.

Kiri Choi, J. Kyle Medley, Matthias König, Kaylene Stocking, Lucian P. Smith, Stanley Gu, Herbert M. Sauro

Biosyst., 2018

A portable structural analysis library for reaction networks.

Yosef Bedaso, Frank T. Bergmann, Kiri Choi, Kyle Medley, Herbert M. Sauro

Biosyst., 2018

2016

Synthetic Biology Open Language (SBOL) Version 2.1.0.

Jacob Beal, Robert Sidney Cox III, Raik Grünberg, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2016

phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.

Kiri Choi, Lucian P. Smith, J. Kyle Medley, Herbert M. Sauro

J. Bioinform. Comput. Biol., 2016

2015

Controlling E. coli Gene Expression Noise.

Kyung Hyuk Kim, Kiri Choi, Bryan Bartley, Herbert M. Sauro

IEEE Trans. Biomed. Circuits Syst., 2015

Synthetic Biology Open Language (SBOL) Version 2.0.0.

Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli, Nicholas Roehner, Ernst Oberortner, Matthew R. Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari, Chris J. Myers, Anil Wipat, Herbert M. Sauro

J. Integr. Bioinform., 2015

libRoadRunner: a high performance SBML simulation and analysis library.

Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro

Bioinform., 2015

2014

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems.

Maxwell Lewis Neal, Michael T. Cooling, Lucian P. Smith, Christopher T. Thompson, Herbert M. Sauro, Brian E. Carlson, Daniel L. Cook, John H. Gennari

PLoS Comput. Biol., 2014

Introduction to the Special Issue on Computational Synthetic Biology.

Chris J. Myers, Herbert M. Sauro, Anil Wipat

ACM J. Emerg. Technol. Comput. Syst., 2014

COMBINE archive: One File To Share Them All.

Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère

CoRR, 2014

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.

Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez

BMC Syst. Biol., 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère

BMC Bioinform., 2014

SBML and CellML translation in Antimony and JSim.

Lucian P. Smith, Erik Butterworth, James B. Bassingthwaighte, Herbert M. Sauro

Bioinform., 2014

A C library for retrieving specific reactions from the BioModels database.

Maxwell Lewis Neal, Michal Galdzicki, J. T. Gallimore, Herbert M. Sauro

Bioinform., 2014

2012

Adjusting Phenotypes by Noise Control.

Kyung Hyuk Kim, Herbert M. Sauro

PLoS Comput. Biol., 2012

Modeling and design automation of biological circuits and systems.

Natasa Miskov-Zivanov, James R. Faeder, Chris J. Myers, Herbert M. Sauro

Proceedings of the 2012 IEEE/ACM International Conference on Computer-Aided Design, 2012

Measuring the degree of modularity in gene regulatory networks from the relaxation of finite perturbations.

Kyung Hyuk Kim, Herbert M. Sauro

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Design and construction of a prototype CMY (Cyan-Magenta-Yellow) genetic circuit as a mutational readout device to measure evolutionary stability dynamics and determine design principles for robust synthetic systems.

Sean C. Sleight, Herbert M. Sauro

Proceedings of the Thirteenth International Conference on the Simulation and Synthesis of Living Systems, 2012

2011

Minimum Information About a Simulation Experiment (MIASE).

Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère

PLoS Comput. Biol., 2011

2010

SBML2TikZ: supporting the SBML render extension in LaTeX.

Si Yuan Shen, Frank T. Bergmann, Herbert M. Sauro

Bioinform., 2010

2009

Biological Models of Molecular Network Dynamics.

Herbert M. Sauro

Proceedings of the Encyclopedia of Complexity and Systems Science, 2009

Antimony: a modular model definition language.

Lucian P. Smith, Frank T. Bergmann, Deepak Chandran, Herbert M. Sauro

Bioinform., 2009

2008

Comparing simulation results of SBML capable simulators.

Frank T. Bergmann, Herbert M. Sauro

Bioinform., 2008

2007

A Model for p53 Dynamics Triggered by DNA Damage.

Vijay Chickarmane, Animesh Ray, Herbert M. Sauro, Ali Nadim

SIAM J. Appl. Dyn. Syst., 2007

Stochastic simulation GUI for biochemical networks.

Ravishankar Rao Vallabhajosyula, Herbert M. Sauro

Bioinform., 2007

2006

Transcriptional Dynamics of the Embryonic Stem Cell Switch.

Vijay Chickarmane, Carl Troein, Ulrike A. Nuber, Herbert M. Sauro, Carsten Peterson

PLoS Comput. Biol., 2006

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka

Nucleic Acids Res., 2006

Conservation analysis of large biochemical networks.

Ravishankar Rao Vallabhajosyula, Vijay Chickarmane, Herbert M. Sauro

Bioinform., 2006

Supporting the SBML layout extension.

Anastasia Deckard, Frank T. Bergmann, Herbert M. Sauro

Bioinform., 2006

Complexity reduction of biochemical networks.

Ravishankar Rao Vallabhajosyula, Herbert M. Sauro

Proceedings of the Winter Simulation Conference WSC 2006, 2006

Challenges for modeling and simulation methods in systems biology.

Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson

Proceedings of the Winter Simulation Conference WSC 2006, 2006

Innovation in software for systems biology: is there any?

Herbert M. Sauro

Proceedings of the Winter Simulation Conference WSC 2006, 2006

SBW - a modular framework for systems biology.

Frank T. Bergmann, Herbert M. Sauro

Proceedings of the Winter Simulation Conference WSC 2006, 2006

Simulation of biochemical networks - Cellular networks as dynamic control systems.

Herbert M. Sauro

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005

The SBW-CMATLAB interface.

Cameron Wellock, Vijay Chickarmane, Herbert M. Sauro

Bioinform., 2005

Bifurcation discovery tool.

Vijay Chickarmane, Sri R. Paladugu, Frank T. Bergmann, Herbert M. Sauro

Bioinform., 2005

2003

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, Dennis Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang

Bioinform., 2003

2002

The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology.

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

1997

Elasticities in Metabolic Control Analysis: algebraic derivation of simplified expressions.

J. H. Woods, Herbert M. Sauro

Comput. Appl. Biosci., 1997

1993

SCAMP: a general-purpose simulator and metabolic control analysis program.

Herbert M. Sauro

Comput. Appl. Biosci., 1993