Henry van den Bedem

According to our database, Henry van den Bedem authored at least 15 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

AtomNet PoseRanker: Enriching Ligand Pose Quality for Dynamic Proteins in Virtual High-Throughput Screens.

Kate A. Stafford, Brandon M. Anderson, Jon Sorenson, Henry van den Bedem

J. Chem. Inf. Model., 2022

Kinematic Vibrational Entropy Assessment and Analysis of SARS CoV-2 Main Protease.

Xiyu Chen, Sigrid Leyendecker, Henry van den Bedem

J. Chem. Inf. Model., 2022

An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries.

Aryan Pedawi, Pawel Gniewek, Chaoyi Chang, Brandon M. Anderson, Henry van den Bedem

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

2020

Sequence-guided protein structure determination using graph convolutional and recurrent networks.

Po-Nan Li, Saulo Henrique Pires de Oliveira, Soichi Wakatsuki, Henry van den Bedem

Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

2018

Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion.

Dominik Budday, Sigrid Leyendecker, Henry van den Bedem

J. Chem. Inf. Model., 2018

Collision-free poisson motion planning in ultra high-dimensional molecular conformation spaces.

Rasmus Fonseca, Dominik Budday, Henry van den Bedem

J. Comput. Chem., 2018

2017

Fast, clash-free RNA conformational morphing using molecular junctions.

Amélie Héliou, Dominik Budday, Rasmus Fonseca, Henry van den Bedem

Bioinform., 2017

2016

Probing RNA Native Conformational Ensembles with Structural Constraints.

Rasmus Fonseca, Henry van den Bedem, Julie Bernauer

J. Comput. Biol., 2016

2015

Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs.

Dimitar V. Pachov, Henry van den Bedem

PLoS Comput. Biol., 2015

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit.

Daniel A. Keedy, James S. Fraser, Henry van den Bedem

PLoS Comput. Biol., 2015

KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids.

Rasmus Fonseca, Henry van den Bedem, Julie Bernauer

Proceedings of the Research in Computational Molecular Biology, 2015

2008

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.

Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Modeling Structural Heterogeneity in Proteins from X-Ray Data.

Ankur Dhanik, Henry van den Bedem, Ashley Deacon, Jean-Claude Latombe

Proceedings of the Algorithmic Foundation of Robotics VIII, 2008

2007

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.

Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

2004

Computing Protein Structures from Electron Density Maps: The Missing Fragment Problem.

Itay Lotan, Henry van den Bedem, Ashley Deacon, Jean-Claude Latombe

Proceedings of the Algorithmic Foundations of Robotics VI, 2004