Helena F. Deus

According to our database, Helena F. Deus authored at least 25 papers between 2008 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2019

Big Semantic Data Processing in the Life Sciences Domain.

Helena F. Deus

Proceedings of the Encyclopedia of Big Data Technologies., 2019

2018

Use of Internal Testing Data to Help Determine Compensation for Crowdsourcing Tasks.

Michael Lauruhn, Paul Groth, Corey A. Harper, Helena F. Deus

Proceedings of the 2nd International Workshop on Augmenting Intelligence with Humans­-in-­the-­Loop co-located with 17th International Semantic Web Conference (ISWC 2018), 2018

2017

Combining pattern matching with word embeddings for the extraction of experimental variables from scientific literature.

Helena F. Deus, Corey A. Harper, Darin McBeath, Ron Daniel Jr.

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

2014

Big linked cancer data: Integrating linked TCGA and PubMed.

Muhammad Saleem, Maulik R. Kamdar, Aftab Iqbal, Shanmukha S. Padmanabhuni, Helena F. Deus, Axel-Cyrille Ngonga Ngomo

J. Web Semant., 2014

A collaborative methodology for developing a semantic model for interlinking Cancer Chemoprevention linked-data sources.

Dimitris Zeginis, Ali Hasnain, Nikolaos Loutas, Helena Futscher Deus, Ronan Fox, Konstantinos A. Tarabanis

Semantic Web, 2014

ReVeaLD: A user-driven domain-specific interactive search platform for biomedical research.

Maulik R. Kamdar, Dimitris Zeginis, Ali Hasnain, Stefan Decker, Helena F. Deus

J. Biomed. Informatics, 2014

TopFed: TCGA Tailored Federated Query Processing and Linking to LOD.

Muhammad Saleem, Shanmukha S. Padmanabhuni, Axel-Cyrille Ngonga Ngomo, Aftab Iqbal, Jonas S. Almeida, Stefan Decker, Helena F. Deus

J. Biomed. Semant., 2014

Linked Biomedical Dataspace: Lessons Learned Integrating Data for Drug Discovery.

Ali Hasnain, Maulik R. Kamdar, Panagiotis Hasapis, Dimitris Zeginis, Claude N. Warren Jr., Helena F. Deus, Dimitrios Ntalaperas, Konstantinos A. Tarabanis, Muntazir Mehdi, Stefan Decker

Proceedings of the Semantic Web - ISWC 2014, 2014

A Roadmap for Navigating the Life Sciences Linked Open Data Cloud.

Ali Hasnain, Syeda Sana e Zainab, Maulik R. Kamdar, Qaiser Mehmood, Claude N. Warren Jr., Qurratal Ain Fatimah, Helena F. Deus, Muntazir Mehdi, Stefan Decker

Proceedings of the Semantic Technology - 4th Joint International Conference, 2014

2013

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Meg Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan

BMC Bioinform., 2013

A self-updating road map of The Cancer Genome Atlas.

David E. Robbins, Alexander Grüneberg, Helena F. Deus, Murat M. Tanik, Jonas S. Almeida

Bioinform., 2013

DAW: Duplicate-AWare Federated Query Processing over the Web of Data.

Muhammad Saleem, Axel-Cyrille Ngonga Ngomo, Josiane Xavier Parreira, Helena F. Deus, Manfred Hauswirth

Proceedings of the Semantic Web - ISWC 2013, 2013

Linked cancer genome atlas database.

Muhammad Saleem, Shanmukha S. Padmanabhuni, Axel-Cyrille Ngonga Ngomo, Jonas S. Almeida, Stefan Decker, Helena F. Deus

Proceedings of the I-SEMANTICS 2013 - 9th International Conference on Semantic Systems, 2013

Looking into Reactome through Biopax Lens.

Laleh Kazemzadeh, Helena F. Deus, Michel Dumontier, Frank Barry

Proceedings of the 4th Canadian Semantic Web Symposium part of the Semantic Trilogy 2013, 2013

TCGA Toolbox: an Open Web App Framework for Distributing Big Data Analysis Pipelines for Cancer Genomics.

David E. Robbins, Alexander Grüneberg, Helena F. Deus, Murat M. Tanik, Jonas S. Almeida

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Emerging practices for mapping and linking life sciences data using RDF - A case series.

M. Scott Marshall, Richard D. Boyce, Helena F. Deus, Jun Zhao, Egon L. Willighagen, Matthias Samwald, Elgar Pichler, Janos G. Hajagos, Eric Prud'hommeaux, Susie Stephens

J. Web Semant., 2012

Translating standards into practice - One Semantic Web API for Gene Expression.

Helena F. Deus, Eric Prud'hommeaux, Michael Miller, Jun Zhao, James Malone, Tomasz Adamusiak, Jamie P. McCusker, Sudeshna Das, Philippe Rocca-Serra, Ronan Fox, M. Scott Marshall

J. Biomed. Informatics, 2012

SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0.

Andrea Splendiani, Andra Waagmeester, Carina Haupt, Helena F. Deus

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

2011

S3QL: A distributed domain specific language for controlled semantic integration of life sciences data.

Helena F. Deus, Miria C. Correa, Romesh Stanislaus, Maria Miragaia, Wolfgang Maass, Hermínia de Lencastre, Ronan Fox, Jonas S. Almeida

BMC Bioinform., 2011

2010

AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services.

Miria C. Correa, Helena F. Deus, Ana Tereza Ribeiro de Vasconcelos, Yuki Hayashi, Jaffer A. Ajani, Srikrishna V. Patnana, Jonas S. Almeida

BMC Medical Informatics Decis. Mak., 2010

Exposing the cancer genome atlas as a SPARQL endpoint.

Helena F. Deus, Diogo F. Veiga, Pablo R. Freire, John N. Weinstein, Gordon B. Mills, Jonas S. Almeida

J. Biomed. Informatics, 2010

S3DB core: a framework for RDF generation and management in bioinformatics infrastructures.

Jonas S. Almeida, Helena F. Deus, Wolfgang Maass

BMC Bioinform., 2010

Provenance of Microarray Experiments for a Better Understanding of Experiment Results.

Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung

Proceedings of the Second International Workshop on the role of Semantic Web in Provenance Management, 2010

2009

DASMiner: discovering and integrating data from DAS sources.

Diogo F. Veiga, Helena F. Deus, Caner Akdemir, Ana Tereza Ribeiro de Vasconcelos, Jonas S. Almeida

BMC Syst. Biol., 2009

2008

RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays.

Romesh Stanislaus, Mark Carey, Helena F. Deus, Kevin R. Coombes, Bryan T. J. Hennessy, Gordon B. Mills, Jonas S. Almeida

BMC Bioinform., 2008