Hatice Gulcin Ozer

According to our database, Hatice Gulcin Ozer authored at least 14 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments.

Tareian A. Cazares, Richard E. Higgs, Jibo Wang, Hatice Gulcin Ozer

Bioinform., January, 2024

2022

The Importance of Weakly Co-Evolving Residue Networks in Proteins is Revealed by Visual Analytics.

Sidharth Mohan, Hatice Gulcin Ozer, William C. Ray

Frontiers Bioinform., 2022

2019

BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation.

Venkat Sundar Gadepalli, Hatice Gulcin Ozer, Ayse Selen Yilmaz, Maciej Pietrzak, Amy Webb

BMC Bioinform., 2019

Scaling R Shiny Apps to Multiple Concurrent Users in a Secured HPC Environment Using Open OnDemand.

Eric Franz, Hatice Gulcin Ozer, Trey Dockendorf, Venkat Sundar Gadepalli, Amy Webb, Alan Chalker, Maciej Pietrzak, Morgan E. Rodgers, Douglas Johnson, David E. Hudak

Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

2014

Removing Sequential Bottlenecks in Analysis of Next-Generation Sequencing Data.

Yi Wang, Gagan Agrawal, Hatice Gulcin Ozer, Kun Huang

Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

2011

Comparing Multiple Chip-Sequencing Experiments.

Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang

J. Bioinform. Comput. Biol., 2011

2010

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.

Jie Zhang, Yang Xiang, Liya Ding, Kristin Keen-Circle, Tara Borlawsky, Hatice Gulcin Ozer, Ruoming Jin, Philip R. O. Payne, Kun Huang

BMC Bioinform., 2010

2009

A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.

Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang

Proceedings of the Bioinformatics and Computational Biology, 2009

Clinical Attribute Network for Chronic Lymphocytic Leukemia.

Abhisek Kundu, Hatice Gulcin Ozer, Tara Borlawsky, Kristin C. Circle, Kun Huang, Philip R. O. Payne

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.

Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç

Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2007

Informative Motifs in Protein Family Alignments.

Hatice Gulcin Ozer, William C. Ray

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

2006

MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments.

Hatice Gulcin Ozer, William C. Ray

Nucleic Acids Res., 2006

2005

Discovering biostructure constraints using VRML visualization.

William C. Ray, Hatice Gulcin Ozer

Proceedings of the International Conference on Computer Graphics and Interactive Techniques, 2005

Clustering of eukaryotic orthologs based on sequence and Domain Similarities using the Markov Graph-Flow Algorithm.

Hatice Gulcin Ozer, Jingchun Chen, Fa Zhang, Bo Yuan

Proceedings of the Advances in Bioinformatics and Its Applications, 2005