Haodi Feng

According to our database, Haodi Feng authored at least 41 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

New approximation algorithms for RNA secondary structures prediction problems by local search.

Aizhong Zhou, Haodi Feng, Jiong Guo, Haitao Jiang, Nan Liu, Binhai Zhu, Daming Zhu

Theor. Comput. Sci., 2024

FOKHic: A Framework of ${\varvec{k}}$-mer Based Hierarchical Classification.

Yu Zhang, Yang Zhou, Haodi Feng, Daming Zhu

Proceedings of the Advanced Intelligent Computing Technology and Applications, 2024

2023

Minimize Maximum Coverage of Fragment Alignment Selection.

Yuyang Wang, Haitao Jiang, Haodi Feng, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Approximation algorithms for sorting by bounded singleton moves.

Shengjun Xie, Haodi Feng, Haitao Jiang, Daming Zhu

Theor. Comput. Sci., 2022

MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly.

Jin Zhao, Haodi Feng, Daming Zhu, Yu Lin

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

DLmeta: a deep learning method for metagenomic identification.

Yu Zhang, Chenchen Li, Haodi Feng, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Longest k-tuple Common Sub-Strings.

Tiantian Li, Daming Zhu, Haitao Jiang, Haodi Feng, Xuefeng Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Sorting a Permutation by Best Short Swaps.

Shu Zhang, Daming Zhu, Haitao Jiang, Jiong Guo, Haodi Feng, Xiaowen Liu

Algorithmica, 2021

TransCoord: Genome-guided Transcripts Assembly by Coordinating Candidate Paths into Two-phased Linear Programming.

Chenchen Li, Jin Zhao, Haodi Feng, Daming Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads".

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads.

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

2019

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees.

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

BMC Bioinform., 2019

An Approximation Algorithm for Sorting by Bounded Singleton Moves.

Shengjun Xie, Haodi Feng, Haitao Jiang, Junfeng Luan, Daming Zhu

Proceedings of the Computing and Combinatorics - 25th International Conference, 2019

2018

Solving the maximum internal spanning tree problem on interval graphs in polynomial time.

Xingfu Li, Haodi Feng, Haitao Jiang, Binhai Zhu

Theor. Comput. Sci., 2018

DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees.

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

Proceedings of the Intelligent Computing Theories and Application, 2018

PASA: Identifying More Credible Structural Variants of Hedou12.

Huiqiang Jia, Haichao Wei, Daming Zhu, Ruizhi Wang, Haodi Feng, Xiangzhong Feng

Proceedings of the Intelligent Computing Theories and Application, 2018

Can a permutation be sorted by best short swaps?.

Shu Zhang, Daming Zhu, Haitao Jiang, Jingjing Ma, Jiong Guo, Haodi Feng

Proceedings of the Annual Symposium on Combinatorial Pattern Matching, 2018

The Longest Common Exemplar Subsequence Problem.

Shu Zhang, Ruizhi Wang, Daming Zhu, Haitao Jiang, Haodi Feng, Jiong Guo, Xiaowen Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract).

Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Improved Approximation Algorithm for the Maximum Base Pair Stackings Problem in RNA Secondary Structures Prediction.

Aizhong Zhou, Haitao Jiang, Jiong Guo, Haodi Feng, Nan Liu, Binhai Zhu

Proceedings of the Computing and Combinatorics - 23rd International Conference, 2017

2016

A Polynomial Time Algorithm for Finding a Spanning Tree with Maximum Number of Internal Vertices on Interval Graphs.

Xingfu Li, Haodi Feng, Haitao Jiang, Binhai Zhu

Proceedings of the Frontiers in Algorithmics, 10th International Workshop, 2016

Estimating isoform abundance by Particle Swarm Optimization.

Jin Zhao, Haodi Feng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2014

An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves.

Haitao Jiang, Haodi Feng, Daming Zhu

Proceedings of the Algorithms and Computation - 25th International Symposium, 2014

2010

Minimizing the makespan on a single parallel batching machine.

Shenpeng Lu, Haodi Feng, Xiuqian Li

Theor. Comput. Sci., 2010

2009

Parameterized computational complexity of control problems in voting systems.

Hong Liu, Haodi Feng, Daming Zhu, Junfeng Luan

Theor. Comput. Sci., 2009

Parameterized Complexity of Finding Elementary Modes in Metabolic Networks.

Hong Liu, Haodi Feng, Daming Zhu

Proceedings of the International Joint Conferences on Bioinformatics, 2009

Minimizing Makespan on an Unbounded Parallel Batch Processor with Rejection and Release Times.

Haodi Feng, Hong Liu

Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009

2008

New Evolutionary Subset: Application to Symbiotic Evolutionary Algorithm for Job-Shop Scheduling Problem.

Zhaofeng Su, Hongze Qiu, Daming Zhu, Haodi Feng

Proceedings of the Fourth International Conference on Natural Computation, 2008

2007

Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor.

Hong Liu, Haodi Feng, Daming Zhu

Proceedings of the Advanced Data Mining and Applications, Third International Conference, 2007

2005

A PTAS for Semiconductor Burn-in Scheduling.

Xiaotie Deng, Haodi Feng, Guojun Li, Benyun Shi

J. Comb. Optim., 2005

2004

Accessor Variety Criteria for Chinese Word Extraction.

Haodi Feng, Kang Chen, Xiaotie Deng, Weimin Zheng

Comput. Linguistics, 2004

Minimizing Mean Completion Time in a Batch Processing System.

Xiaotie Deng, Haodi Feng, Pixing Zhang, Yuzhong Zhang, Hong Zhu

Algorithmica, 2004

Unsupervised Segmentation of Chinese Corpus Using Accessor Variety.

Haodi Feng, Kang Chen, Chunyu Kit, Xiaotie Deng

Proceedings of the Natural Language Processing, 2004

2002

Orthogonal factorizations of graphs.

Haodi Feng, Guizhen Liu

J. Graph Theory, 2002

A PTAS for Minimizing Total Completion Time of Bounded Batch Scheduling.

Xiaotie Deng, Haodi Feng, Guojun Li, Guizhen Liu

Int. J. Found. Comput. Sci., 2002

Text Distinguishers Used in an Interactive Meta Search Engine.

Kang Chen, Weimin Zheng, Xiaotie Deng, Haodi Feng, Shanfeng Zhu

Proceedings of the Advances in Web-Age Information Management, 2002

A PTAS for Minimizing Total Completion Time of Bounded Batch Scheduling.

Mao-cheng Cai, Xiaotie Deng, Haodi Feng, Guojun Li, Guizhen Liu

Proceedings of the Integer Programming and Combinatorial Optimization, 2002

2001

(g, f)-Factorizations Orthogonal to k Subgraphs.

Haodi Feng

Proceedings of the Graph-Theoretic Concepts in Computer Science, 2001

A Polynomial Time Approximation Scheme for Minimizing Total Completion Time of Unbounded Batch Scheduling.

Xiaotie Deng, Haodi Feng, Pixing Zhang, Hong Zhu

Proceedings of the Algorithms and Computation, 12th International Symposium, 2001

On-Line Selection Of Distinguishing Elements For Focused Information Retrieval.

Kang Chen, Weimin Zheng, Hung Chim, Xiaotie Deng, Haodi Feng, Shanfeng Zhu

Proceedings of the 2001 IEEE International Conference on Multimedia and Expo, 2001

Some Results on Orthogonal Factorizations.

Haodi Feng

Proceedings of the Computing and Combinatorics, 7th Annual International Conference, 2001