Hansheng Xue

According to our database, Hansheng Xue authored at least 17 papers between 2016 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Solving genomic puzzles: computational methods for metagenomic binning.

Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards

Briefings Bioinform., 2024

Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information.

Aishwarya Jayagopal, Hansheng Xue, Ziyang He, Robert J. Walsh, Krishna Kumar Hariprasannan, David Shao Peng Tan, Tuan Zea Tan, Jason J. Pitt, Anand D. Jeyasekharan, Vaibhav Rajan

Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2024

Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning.

Hansheng Xue, Vijini Mallawaarachchi, Lexing Xie, Vaibhav Rajan

Proceedings of the Twelfth International Conference on Learning Representations, 2024

Modeling User Intent Beyond Trigger: Incorporating Uncertainty for Trigger-Induced Recommendation.

Jianxing Ma, Zhibo Xiao, Luwei Yang, Hansheng Xue, Xuanzhou Liu, Wen Jiang, Wei Ning, Guannan Zhang

Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

2022

Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction.

Hansheng Xue, Vaibhav Rajan, Yu Lin

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning.

Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin

Proceedings of the Thirty-Sixth AAAI Conference on Artificial Intelligence, 2022

2021

Integrating multi-network topology for gene function prediction using deep neural networks.

Jiajie Peng, Hansheng Xue, Zhongyu Wei, Idil Tuncali, Jianye Hao, Xuequn Shang

Briefings Bioinform., 2021

Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks.

Hansheng Xue, Luwei Yang, Vaibhav Rajan, Wen Jiang, Yi Wei, Yu Lin

Proceedings of the WWW '21: The Web Conference 2021, 2021

2020

Modeling Dynamic Heterogeneous Network for Link Prediction Using Hierarchical Attention with Temporal RNN.

Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, Yu Lin

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2020

2019

Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO.

Hansheng Xue, Jiajie Peng, Xuequn Shang

BMC Syst. Biol., 2019

TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology.

Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang

BMC Bioinform., 2019

Integrating Multi-Network Topology via Deep Semi-supervised Node Embedding.

Hansheng Xue, Jiajie Peng, Jiying Li, Xuequn Shang

Proceedings of the 28th ACM International Conference on Information and Knowledge Management, 2019

Towards Gene Function Prediction via Multi-Networks Representation Learning.

Hansheng Xue, Jiajie Peng, Xuequn Shang

Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018

Deep Feature Learning of Multi-Network Topology for Node Classification.

Hansheng Xue, Jiajie Peng, Xuequn Shang

CoRR, 2018

TSGOE: A web tool for tissue-specific gene ontology enrichment.

Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

A novel method to measure the semantic similarity of HPO terms.

Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen

Int. J. Data Min. Bioinform., 2017

2016

Measuring phenotype semantic similarity using Human Phenotype Ontology.

Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016