Hans-Peter Lenhof

J. Comput. Chem., 2009

A new method for the gradient-based optimization of molecular complexes.

[BibT_eX]

[DOI]

J. Comput. Chem., 2009

Large-scale antibody profiling of human blood sera: The future of molecular diagnosis.

[BibT_eX]

[DOI]

Inform. Spektrum, 2009

A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.

[BibT_eX]

[DOI]

Bioinform., 2009

Automated Bond Order Assignment as an Optimization Problem.

[BibT_eX]

[DOI]

Proceedings of the German Conference on Bioinformatics 2009, 2009

Integer Linear Programming in Computational Biology.

[BibT_eX]

[DOI]

Proceedings of the Efficient Algorithms, 2009

2008

GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.

[BibT_eX]

[DOI]

BMC Bioinform., 2008

2007

SePaCS - a web-based application for classification of seroreactivity profiles.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2007

GeneTrail - advanced gene set enrichment analysis.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2007

Abstract analysis of pathways using the BN++ software framework.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2007

BNDB - The Biochemical Network Database.

[BibT_eX]

[DOI]

BMC Bioinform., 2007

Computation of significance scores of unweighted Gene Set Enrichment Analyses.

[BibT_eX]

[DOI]

Andreas Keller

Christina Backes

BMC Bioinform., 2007

Electrostatic potentials of proteins in water: a structured continuum approach.

[BibT_eX]

[DOI]

Bioinform., 2007

2006

A branch-and-cut algorithm for multiple sequence alignment.

[BibT_eX]

[DOI]

Math. Program., 2006

BN++ - A Biological Information System.

[BibT_eX]

[DOI]

J. Integr. Bioinform., 2006

A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

BALLView: a tool for research and education in molecular modeling.

[BibT_eX]

[DOI]

Bioinform., 2006

2005

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2005

BALLView: An object-oriented molecular visualization and modeling framework.

[BibT_eX]

[DOI]

J. Comput. Aided Mol. Des., 2005

Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools.

[BibT_eX]

[DOI]

Proceedings of the Computational Proteomics, 20.-25. November 2005, 2005

2004

Molekulare Bioinformatik.

[BibT_eX]

[DOI]

Ralf Hofestädt

it Inf. Technol., 2004

2002

A Combinatorial Approach to Protein Docking with Flexible Side Chains.

[BibT_eX]

[DOI]

J. Comput. Biol., 2002

BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

A NMR-spectra-based scoring function for protein docking.

[BibT_eX]

[DOI]

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000

Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL).

[BibT_eX]

[DOI]

Nicolas Boghossian

ACM J. Exp. Algorithmics, 2000

Simulating synthetic polymer chains in parallel.

[BibT_eX]

[DOI]

Future Gener. Comput. Syst., 2000

A polyhedral approach to sequence alignment problems.

[BibT_eX]

[DOI]

Discret. Appl. Math., 2000

BALL-rapid software prototyping in computational molecular biology.

[BibT_eX]

[DOI]

Bioinform., 2000

Workshop "Molekulare Bioinformatik".

[BibT_eX]

[DOI]

Ralf Hofestädt

Proceedings of the Informatik 2000, 2000

1999

An exact solution for the segment-to-segment multiple sequence alignment problem.

[BibT_eX]

[DOI]

Burkhard Morgenstern

Knut Reinert

Bioinform., 1999

BALL: Biochemical Algorithms Library.

[BibT_eX]

[DOI]

Nicolas Boghossian

Proceedings of the Algorithm Engineering, 1999

<i>q</i>-gram based database searching using a suffix array (QUASAR).

[BibT_eX]

[DOI]

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Rapid Software Prototyping in Computational Molecular Biology.

[BibT_eX]

Proceedings of the German Conference on Bioinformatics, 1999

1998

A Polyhedral Approach to RNA Sequence Structure Alignment.

[BibT_eX]

[DOI]

Knut Reinert

Martin Vingron

J. Comput. Biol., 1998

1997

A branch-and-cut algorithm for multiple sequence alignment.

[BibT_eX]

[DOI]

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

New contact measures for the protein docking problem.

[BibT_eX]

[DOI]

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

Parallel MD-Simulations of Synthetic Polymers.

[BibT_eX]

Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997

1995

Static and Dynamic Algorithms for <i>k</i>-Point Clustering Problems.

[BibT_eX]

[DOI]

J. Algorithms, 1995

Sequential and parallel algorithms for the k closest pairs problem.

[BibT_eX]

[DOI]

Int. J. Comput. Geom. Appl., 1995

Maintaining the Visibility Map of Spheres While Moving the Viewpoint on a Circle at Infinity.

[BibT_eX]

[DOI]

Algorithmica, 1995

1994

Using Persistent Data Structures for Adding Range Restrictions to Searching Problems.

[BibT_eX]

[DOI]

RAIRO Theor. Informatics Appl., 1994

An Animation of a Fixed-Radius All-Nearest-Neighbors Algorithm.

[BibT_eX]

[DOI]

Proceedings of the Tenth Annual Symposium on Computational Geometry, 1994

1993

Distanz- und Suchprobleme in der algorithmischen Geometrie und Anwendungen in der Bioinformatik.

[BibT_eX]

[DOI]

PhD thesis, 1993

An optimal construction method for generalized convex layers.

[BibT_eX]

[DOI]

Int. J. Comput. Geom. Appl., 1993

Static and Dynamic Algorithms for k-Point Clustering Problems.

[BibT_eX]

[DOI]

Proceedings of the Algorithms and Data Structures, Third Workshop, 1993

1992

Enumerating the k Closest Pairs Optimally

[BibT_eX]

[DOI]