Hanchuan Peng

According to our database, Hanchuan Peng authored at least 102 papers between 1999 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

DSM: Deep sequential model for complete neuronal morphology representation and feature extraction.

Feng Xiong, Peng Xie, Zuohan Zhao, Yiwei Li, Sujun Zhao, Linus Manubens-Gil, Lijuan Liu, Hanchuan Peng

Patterns, January, 2024

Meet the authors: Hanchuan Peng, Peng Xie, and Feng Xiong.

Hanchuan Peng, Peng Xie, Feng Xiong

Patterns, January, 2024

DINeuro: Distilling Knowledge from 2D Natural Images via Deformable Tubular Transferring Strategy for 3D Neuron Reconstruction.

Yik San Cheng, Runkai Zhao, Heng Wang, Hanchuan Peng, Yui Lo, Yuqian Chen, Lauren J. O'Donnell, Weidong Cai

CoRR, 2024

Boosting 3D Neuron Segmentation with 2D Vision Transformer Pre-trained on Natural Images.

Yik San Cheng, Runkai Zhao, Heng Wang, Hanchuan Peng, Weidong Cai

CoRR, 2024

2023

SNAP: a structure-based neuron morphology reconstruction automatic pruning pipeline.

Liya Ding, Xuan Zhao, Shuxia Guo, Yufeng Liu, Lijuan Liu, Yimin Wang, Hanchuan Peng

Frontiers Neuroinformatics, March, 2023

Tracing weak neuron fibers.

Yufeng Liu, Ye Zhong, Xuan Zhao, Lijuan Liu, Liya Ding, Hanchuan Peng

Bioinform., January, 2023

Towards NeuroAI: Introducing Neuronal Diversity into Artificial Neural Networks.

Feng-Lei Fan, Yingxin Li, Hanchuan Peng, Tieyong Zeng, Fei Wang

CoRR, 2023

2022

Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains.

Shengdian Jiang, Yimin Wang, Lijuan Liu, Liya Ding, Zongcai Ruan, Hong-Wei Dong, Giorgio A. Ascoli, Michael Hawrylycz, Hongkui Zeng, Hanchuan Peng

Neuroinformatics, 2022

Smart imaging to empower brain-wide neuroscience at single-cell levels.

Shuxia Guo, Jie Xue, Jian Liu, Xiangqiao Ye, Yichen Guo, Di Liu, Xuan Zhao, Feng Xiong, Xiaofeng Han, Hanchuan Peng

Brain Informatics, 2022

mBrainAligner-Web: a web server for cross-modal coherent registration of whole mouse brains.

Yuanyuan Li, Jun Wu, Donghuan Lu, Chao Xu, Yefeng Zheng, Hanchuan Peng, Lei Qu

Bioinform., 2022

Image enhancement to leverage the 3D morphological reconstruction of single-cell neurons.

Shuxia Guo, Xuan Zhao, Shengdian Jiang, Liya Ding, Hanchuan Peng

Bioinform., 2022

TreeMoCo: Contrastive Neuron Morphology Representation Learning.

Hanbo Chen, Jiawei Yang, Daniel Maxim Iascone, Lijuan Liu, Lei He, Hanchuan Peng, Jianhua Yao

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

2021

Single Neuron Segmentation Using Graph-Based Global Reasoning with Auxiliary Skeleton Loss from 3D Optical Microscope Images.

Heng Wang, Yang Song, Chaoyi Zhang, Jianhui Yu, Siqi Liu, Hanchuan Peng, Tom Weidong Cai

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020

DeepBranch: Deep Neural Networks for Branch Point Detection in Biomedical Images.

Yinghui Tan, Min Liu, Weixun Chen, Xueping Wang, Hanchuan Peng, Yaonan Wang

IEEE Trans. Medical Imaging, 2020

AIDE: Annotation-efficient deep learning for automatic medical image segmentation.

Cheng Li, Rongpin Wang, Zaiyi Liu, Meiyun Wang, Hongna Tan, Yaping Wu, Xinfeng Liu, Hui Sun, Rui Yang, Xin Liu, Ismail Ben Ayed, Hairong Zheng, Hanchuan Peng, Shanshan Wang

CoRR, 2020

3D Conditional Adversarial Learning for Synthesizing Microscopic Neuron Image Using Skeleton-to-Neuron Translation.

Zihao Tang, Donghao Zhang, Yang Song, Heng Wang, Dongnan Liu, Chaoyi Zhang, Siqi Liu, Hanchuan Peng, Weidong Cai

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019

A Multiscale Ray-Shooting Model for Termination Detection of Tree-Like Structures in Biomedical Images.

Min Liu, Weixun Chen, Chao Wang, Hanchuan Peng

IEEE Trans. Medical Imaging, 2019

FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree.

Jian Yang, Ming Hao, Xiaoyang Liu, Zhijiang Wan, Ning Zhong, Hanchuan Peng

Neuroinformatics, 2019

Segmenting Neuronal Structure in 3D Optical Microscope Images via Knowledge Distillation with Teacher-Student Network.

Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Yue Wang, Dagan Feng, Hanchuan Peng, Weidong Cai

Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Learning Hierarchical and Shared Features for Improving 3D Neuron Reconstruction.

Hao Yuan, Na Zou, Shaoting Zhang, Hanchuan Peng, Shuiwang Ji

Proceedings of the 2019 IEEE International Conference on Data Mining, 2019

Multiscale Kernels for Enhanced U-Shaped Network to Improve 3D Neuron Tracing.

Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Heng Huang, Mei Chen, Hanchuan Peng, Weidong Cai

Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2019

2018

Automated 3-D Neuron Tracing With Precise Branch Erasing and Confidence Controlled Back Tracking.

Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai

IEEE Trans. Medical Imaging, 2018

3D neuron tip detection in volumetric microscopy images using an adaptive ray-shooting model.

Min Liu, Rong Gong, Weixun Chen, Hanchuan Peng

Pattern Recognit., 2018

Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction.

Donghao Zhang, Siqi Liu, Yang Song, Dagan Feng, Hanchuan Peng, Weidong Cai

Neuroinformatics, 2018

<i>DeepNeuron</i>: an open deep learning toolbox for neuron tracing.

Zhi Zhou, Hsien-Chi Kuo, Hanchuan Peng, Fuhui Long

Brain Informatics, 2018

Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images.

Heng Wang, Donghao Zhang, Yang Song, Siqi Liu, Rong Gao, Hanchuan Peng, Weidong Cai

Proceedings of the 2018 Digital Image Computing: Techniques and Applications, 2018

2017

Deep Learning Segmentation of Optical Microscopy Images Improves 3-D Neuron Reconstruction.

Rongjian Li, Tao Zeng, Hanchuan Peng, Shuiwang Ji

IEEE Trans. Medical Imaging, 2017

Ensemble Neuron Tracer for 3D Neuron Reconstruction.

Ching-Wei Wang, Yu-Ching Lee, Hilmil Pradana, Zhi Zhou, Hanchuan Peng

Neuroinformatics, 2017

Transcriptome Architecture of Adult Mouse Brain Revealed by Sparse Coding of Genome-Wide In Situ Hybridization Images.

Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Meng Li, Hanchuan Peng, Joe Z. Tsien, Tianming Liu

Neuroinformatics, 2017

N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions.

Eduardo Conde-Sousa, Peter Szücs, Hanchuan Peng, Paulo Aguiar

Neuroinformatics, 2017

Fast assembling of neuron fragments in serial 3D sections.

Hanbo Chen, Daniel Maxim Iascone, Nuno Maçarico da Costa, Ed S. Lein, Tianming Liu, Hanchuan Peng

Brain Informatics, 2017

Triple-Crossing 2.5D Convolutional Neural Network for Detecting Neuronal Arbours in 3D Microscopic Images.

Siqi Liu, Donghao Zhang, Yang Song, Hanchuan Peng, Weidong Cai

Proceedings of the Machine Learning in Medical Imaging - 8th International Workshop, 2017

Automatic 3D Single Neuron Reconstruction with Exhaustive Tracing.

Zihao Tang, Donghao Zhang, Siqi Liu, Yang Song, Hanchuan Peng, Weidong Cai

Proceedings of the 2017 IEEE International Conference on Computer Vision Workshops, 2017

2016

TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.

Zhi Zhou, Xiaoxiao Liu, Brian Long, Hanchuan Peng

Neuroinformatics, 2016

Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking.

Siqi Liu, Donghao Zhang, Sidong Liu, Dagan Feng, Hanchuan Peng, Weidong Cai

Neuroinformatics, 2016

Reconstructing the brain: from image stacks to neuron synthesis.

Julian C. Shillcock, Michael Hawrylycz, Sean L. Hill, Hanchuan Peng

Brain Informatics, 2016

Deep models for brain EM image segmentation: novel insights and improved performance.

Ahmed Fakhry, Hanchuan Peng, Shuiwang Ji

Bioinform., 2016

Discover Mouse Gene Coexpression Landscape Using Dictionary Learning and Sparse Coding.

Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Hanchuan Peng, Joe Z. Tsien, Tianming Liu

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Reconstruction of 3D neuron morphology using Rivulet back-tracking.

Donghao Zhang, Siqi Liu, Sidong Liu, Dagan Feng, Hanchuan Peng, Weidong Cai

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015

3-D Registration of Biological Images and Models: Registration of microscopic images and its uses in segmentation and annotation.

Lei Qu, Fuhui Long, Hanchuan Peng

IEEE Signal Process. Mag., 2015

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures.

Zhi Zhou, Staci A. Sorensen, Hongkui Zeng, Michael Hawrylycz, Hanchuan Peng

Neuroinformatics, 2015

BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.

Yinan Wan, Fuhui Long, Lei Qu, Hang Xiao, Michael Hawrylycz, Eugene W. Myers, Hanchuan Peng

Neuroinformatics, 2015

From DIADEM to BigNeuron.

Hanchuan Peng, Erik Meijering, Giorgio A. Ascoli

Neuroinformatics, 2015

Global analysis of gene expression and projection target correlations in the mouse brain.

Ahmed Fakhry, Tao Zeng, Hanchuan Peng, Shuiwang Ji

Brain Informatics, 2015

SmartTracing: self-learning-based Neuron reconstruction.

Hanbo Chen, Hang Xiao, Tianming Liu, Hanchuan Peng

Brain Informatics, 2015

Neuron crawler: An automatic tracing algorithm for very large neuron images.

Zhi Zhou, Staci A. Sorensen, Hanchuan Peng

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Interactive exemplar-based segmentation toolkit for biomedical image analysis.

Xiang Li, Zhi Zhou, Philipp Keller, Hongkui Zeng, Tianming Liu, Hanchuan Peng

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

An open-source VAA3D plugin for real-time 3D visualization of terabyte-sized volumetric images.

Alessandro Bria, Giulio Iannello, Hanchuan Peng

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014

A HPC infrastructure for processing and visualizing neuro-anatomical images obtained by Confocal Light Sheet Microscopy.

Alessandro Bria, Giulio Iannello, Paolo Soda, Hanchuan Peng, Giovanni Erbacci, Giuseppe Fiameni, Giacomo Mariani, Roberto Mucci, Marco Rorro, Francesco Pavone, Ludovico Silvestri, Paolo Frasconi, Roberto Cortini

Proceedings of the International Conference on High Performance Computing & Simulation, 2014

2013

BIOCAT: a pattern recognition platform for customizable biological image classification and annotation.

Jie Zhou, Santosh Lamichhane, Gabriella Sterne, Bing Ye, Hanchuan Peng

BMC Bioinform., 2013

A distance-field based automatic neuron tracing method.

Jinzhu Yang, Paloma T. Gonzalez-Bellido, Hanchuan Peng

BMC Bioinform., 2013

Automated image computing reshapes computational neuroscience.

Hanchuan Peng, Badrinath Roysam, Giorgio A. Ascoli

BMC Bioinform., 2013

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.

Hang Xiao, Hanchuan Peng

Bioinform., 2013

Automated cellular annotation for high-resolution images of adult <i>Caenorhabditis elegans</i>.

Sarah J. Aerni, Xiao Liu, Chuong B. Do, Samuel S. Gross, Andy Nguyen, Stephen D. Guo, Fuhui Long, Hanchuan Peng, Stuart S. Kim, Serafim Batzoglou

Bioinform., 2013

2012

Visualization and Analysis of 3D Microscopic Images.

Fuhui Long, Jianlong Zhou, Hanchuan Peng

PLoS Comput. Biol., 2012

Bioimage informatics: a new category in <i>Bioinformatics</i>.

Hanchuan Peng, Alex Bateman, Alfonso Valencia, Jonathan D. Wren

Bioinform., 2012

2011

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models.

Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers

Neuroinformatics, 2011

Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions.

Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers

Neuroinformatics, 2011

Anisotropic path searching for automatic neuron reconstruction.

Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng

Medical Image Anal., 2011

Simultaneous recognition and segmentation of cells: application in <i>C.elegans</i>.

Lei Qu, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers, Hanchuan Peng

Bioinform., 2011

Automatic 3D neuron tracing using all-path pruning.

Hanchuan Peng, Fuhui Long, Gene Myers

Bioinform., 2011

Seeing More Is Knowing More: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets.

Hanchuan Peng, Fuhui Long

Proceedings of the Research in Computational Molecular Biology, 2011

Automated high speed stitching of large 3D microscopic images.

Yang Yu, Hanchuan Peng

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

3D Neuron Tip Detection in Volumetric Microscopy Images.

Min Liu, Hanchuan Peng, Amit K. Roy-Chowdhury, Eugene W. Myers

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Counting cells in 3D confocal images based on discriminative models.

Jie Zhou, Hanchuan Peng

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems.

Lei Qu, Hanchuan Peng

Bioinform., 2010

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model.

Hanchuan Peng, Zongcai Ruan, Deniz Atasoy, Scott Sternson

Bioinform., 2010

Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching.

Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

2009

Imaging informatics for personalised medicine: applications and challenges.

Tianming Liu, Hanchuan Peng, Xiaobo Zhou

Int. J. Funct. Informatics Pers. Medicine, 2009

VANO: a volume-object image annotation system.

Hanchuan Peng, Fuhui Long, Eugene W. Myers

Bioinform., 2009

2008

Data-driven decomposition for multi-class classification.

Jie Zhou, Hanchuan Peng, Ching Y. Suen

Pattern Recognit., 2008

Straightening <i>Caenorhabditis elegans</i> images.

Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers

Bioinform., 2008

Bioimage informatics: a new area of engineering biology.

Hanchuan Peng

Bioinform., 2008

Automatic Recognition of Cells (ARC) for 3D Images of C. elegans.

Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers

Proceedings of the Research in Computational Molecular Biology, 2008

2007

Automatic recognition and annotation of gene expression patterns of fly embryos.

Jie Zhou, Hanchuan Peng

Bioinform., 2007

Straightening Worm Images.

Hanchuan Peng, Fuhui Long, Eugene W. Myers

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans.

Fuhui Long, Hanchuan Peng, Eugene W. Myers

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

2006

Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques.

Chris H. Q. Ding, Xiaofeng He, Hui Xiong, Hanchuan Peng, Stephen R. Holbrook

Int. J. Data Min. Bioinform., 2006

Clustering gene expression patterns of fly embryos.

Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers

Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

2005

Feature Selection Based on Mutual Information: Criteria of Max-Dependency, Max-Relevance, and Min-Redundancy.

Hanchuan Peng, Fuhui Long, Chris H. Q. Ding

IEEE Trans. Pattern Anal. Mach. Intell., 2005

Minimum Redundancy Feature Selection from Microarray Gene Expression Data.

Chris H. Q. Ding, Hanchuan Peng

J. Bioinform. Comput. Biol., 2005

Evolving Feature Selection.

Huan Liu, Edward R. Dougherty, Jennifer G. Dy, Kari Torkkola, Eugene Tuv, Hanchuan Peng, Chris H. Q. Ding, Fuhui Long, Michael E. Berens, Lance Parsons, Zheng Zhao, Lei Yu, George Forman

IEEE Intell. Syst., 2005

Finding cliques in protein interaction networks via transitive closure of a weighted graph.

Chris H. Q. Ding, Xiaofeng He, Hanchuan Peng

Proceedings of the 5th international workshop on Bioinformatics, 2005

Toward Automatic Annotation of in situ mRNA Expression Patterns of Drosophila Embryos.

Jie Zhou, Hanchuan Peng

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Image Data Mining of Fruitfly Gene Expression Patterns.

Hanchuan Peng

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Cell Phenotype Classification Based on 3D Cell Image Analysis.

Fuhui Long, Hanchuan Peng, Damir Sudar, David W. Knowles, Sophie Lelièvre

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Acquiring and calibrating a high-dynamic-range natural image database.

Fuhui Long, Hanchuan Peng

Proceedings of the Color Imaging X: Processing, Hardcopy, and Applications, San Jose, 2005

2004

A Bayesian morphometry algorithm.

Edward Herskovits, Hanchuan Peng, Christos Davatzikos

IEEE Trans. Medical Imaging, 2004

Image categorization based on clustering spatial frequency maps.

Fuhui Long, Hanchuan Peng, David Dagan Feng

Proceedings of the Storage and Retrieval Methods and Applications for Multimedia 2004, 2004

Comparing <i>in situ m</i>RNA expression patterns of <i>drosophila</i> embryos.

Hanchuan Peng, Eugene W. Myers

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Automatic content extraction of filled-form images based on clustering component block projection vectors.

Hanchuan Peng, Xiaofeng He, Fuhui Long

Proceedings of the Document Recognition and Retrieval XI, 2004

Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes.

Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003

Document Image Recognition Based on Template Matching of Component Block Projections.

Hanchuan Peng, Fuhui Long, Zheru Chi

IEEE Trans. Pattern Anal. Mach. Intell., 2003

Structure Search and Stability Enhancement of Bayesian Networks.

Hanchuan Peng, Chris H. Q. Ding

Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

2002

Bayesian clustering methods for morphological analysis of MR images.

Hanchuan Peng, Edward Herskovits, Christos Davatzikos

Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

2001

Document image template matching based on component block list.

Hanchuan Peng, Fuhui Long, Zheru Chi, Wan-Chi Siu

Pattern Recognit. Lett., 2001

Extracting Semantic Video Objects.

Fuhui Long, David Dagan Feng, Hanchuan Peng, Wan-Chi Siu

IEEE Computer Graphics and Applications, 2001

A Bayesian Learning Algorithm of Discrete Variables for Automatically Mining Irregular Features of Pattern Images.

Hanchuan Peng, Fuhui Long

Proceedings of the Second International Workshop on Multimedia Data Mining, 2001

2000

A Semi-Parametric Hybrid Neural Model for Nonlinear Blind Signal Separation.

Hanchuan Peng, Zheru Chi, Wan-Chi Siu

Int. J. Neural Syst., 2000

Document Image Matching Based on Component Blocks.

Hanchuan Peng, Fuhui Long, Wan-Chi Siu, Zheru Chi, David Dagan Feng

Proceedings of the 2000 International Conference on Image Processing, 2000

A hierarchical distributed genetic algorithm for image segmentation.

Hanchuan Peng, Fuhui Long, Zheru Chi, Wanchi Su

Proceedings of the 2000 Congress on Evolutionary Computation, 2000

1999

Approaching the post nonlinearity of blind mixtures by hybrid neural network.

Hanchuan Peng, Zheru Chi

Proceedings of the International Joint Conference Neural Networks, 1999