Halil Kilicoglu
Orcid: 0000-0003-3987-9393
According to our database1,
Halil Kilicoglu
authored at least 86 papers
between 2003 and 2024.
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Bibliography
2024
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics.
J. Biomed. Semant., December, 2024
Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition.
J. Am. Medical Informatics Assoc., January, 2024
Integrating deep learning architectures for enhanced biomedical relation extraction: a pipeline approach.
Database J. Biol. Databases Curation, January, 2024
J. Biomed. Informatics, 2024
Automatic categorization of self-acknowledged limitations in randomized controlled trial publications.
J. Biomed. Informatics, 2024
CoRR, 2024
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024
UIUC_BioNLP at BioLaySumm: An Extract-then-Summarize Approach Augmented with Wikipedia Knowledge for Biomedical Lay Summarization.
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024
2023
J. Biomed. Informatics, April, 2023
Examining the Causal Effect of First Names on Language Models: The Case of Social Commonsense Reasoning.
CoRR, 2023
CoRR, 2023
Repurposing Drugs for Alzheimer's Diseases through Link Prediction on Biomedical Literature.
Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023
2022
Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.
J. Biomed. Informatics, 2022
J. Biomed. Informatics, 2022
Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions.
CoRR, 2022
The International Workshop on Semantics-enabled Biomedical Literature Analytics (SeBiLAn).
Proceedings of the Companion of The Web Conference 2022, Virtual Event / Lyon, France, April 25, 2022
Proceedings of the AMIA 2022, 2022
Methodological information extraction from randomized controlled trial publications: a pilot study.
Proceedings of the AMIA 2022, 2022
2021
J. Biomed. Informatics, 2021
J. Biomed. Informatics, 2021
Attention-Gated Graph Convolutions for Extracting Drug Interaction Information from Drug Labels.
ACM Trans. Comput. Heal., 2021
Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature.
CoRR, 2021
UIUC_BioNLP at SemEval-2021 Task 11: A Cascade of Neural Models for Structuring Scholarly NLP Contributions.
Proceedings of the 15th International Workshop on Semantic Evaluation, 2021
2020
Proceedings of the AMIA 2020, 2020
2019
Towards a characterization of apparent contradictions in the biomedical literature using context analysis.
J. Biomed. Informatics, 2019
Confirm or refute?: A comparative study on citation sentiment classification in clinical research publications.
J. Biomed. Informatics, 2019
Int. J. Medical Informatics, 2019
Attention-Gated Graph Convolution for Extracting Drugs and Their Interactions from Drug Labels.
CoRR, 2019
Proceedings of the AMIA 2019, 2019
Non-Negative Matrix Factorization for Drug Repositioning: Experiments with the repoDB Dataset.
Proceedings of the AMIA 2019, 2019
2018
Automatic recognition of self-acknowledged limitations in clinical research literature.
J. Am. Medical Informatics Assoc., 2018
Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing.
J. Biomed. Semant., 2018
Biomedical text mining for research rigor and integrity: tasks, challenges, directions.
Briefings Bioinform., 2018
A Multi-Task Learning Framework for Extracting Drugs and Their Interactions from Drug Labels.
Proceedings of the 2018 Text Analysis Conference, 2018
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
2017
A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources.
J. Assoc. Inf. Sci. Technol., 2017
Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017
2016
Sortal anaphora resolution to enhance relation extraction from biomedical literature.
BMC Bioinform., 2016
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016
Proceedings of the ECAI 2016 - 22nd European Conference on Artificial Intelligence, 29 August-2 September 2016, The Hague, The Netherlands, 2016
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016
Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions.
Proceedings of the AMIA 2016, 2016
Proceedings of the 2nd International Workshop on Natural Language Generation and the Semantic Web, 2016
2015
The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.
J. Biomed. Informatics, 2015
Proceedings of the AMIA 2015, 2015
2014
Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference.
PLoS Comput. Biol., 2014
J. Biomed. Informatics, 2014
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014
Proceedings of the AMIA 2014, 2014
2013
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013
Automatically Extracting Clinically Useful Sentences from UpToDate to Support Clinicians' Information Needs.
Proceedings of the AMIA 2013, 2013
2012
Bioinform., 2012
CLaC Labs: Processing Modality and Negation. Working Notes for QA4MRE Pilot Task at CLEF 2012.
Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012
2011
Inf. Serv. Use, 2011
Comput. Intell., 2011
BMC Bioinform., 2011
BMC Bioinform., 2011
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011
2010
Adapting semantic natural language processing technology to address information overload in influenza epidemic management.
J. Assoc. Inf. Sci. Technol., 2010
Combining Relevance Assignment with Quality of the Evidence to Support Guideline Development.
Proceedings of the MEDINFO 2010, 2010
Proceedings of the Fourteenth Conference on Computational Natural Language Learning: Shared Task, 2010
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010
2009
Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation.
J. Biomed. Informatics, 2009
Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence.
J. Am. Medical Informatics Assoc., 2009
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009
2008
Recognizing speculative language in biomedical research articles: a linguistically motivated perspective.
BMC Bioinform., 2008
Proceedings of the AMIA 2008, 2008
2007
Proceedings of the AMIA 2007, 2007
2006
Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment.
J. Assoc. Inf. Sci. Technol., 2006
Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease.
BMC Bioinform., 2006
Proceedings of the AMIA 2006, 2006
2005
Proceedings of the AMIA 2005, 2005
2004
Proceedings of the MEDINFO 2004, 2004
2003
Proceedings of the AMIA 2003, 2003
Proceedings of the AMIA 2003, 2003
Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts.
Proceedings of the AMIA 2003, 2003