Haixu Tang

Orcid: 0000-0001-8963-8155

According to our database1, Haixu Tang authored at least 99 papers between 2001 and 2024.

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Bibliography

2024
LLM-Enhanced Software Patch Localization.
CoRR, 2024

DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training.
CoRR, 2024

Racing on the Negative Force: Efficient Vulnerability Root-Cause Analysis through Reinforcement Learning on Counterexamples.
Proceedings of the 33rd USENIX Security Symposium, 2024

DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training.
Proceedings of the 33rd USENIX Security Symposium, 2024

Protein Domain Embeddings for Fast and Accurate Similarity Search.
Proceedings of the Research in Computational Molecular Biology, 2024

Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering.
Proceedings of the 31st Annual Network and Distributed System Security Symposium, 2024

FairFix: Enhancing Fairness of Pre-Trained Deep Neural Networks with Scarce Data Resources.
Proceedings of the 10th IEEE International Conference on Intelligent Data and Security, 2024

The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks.
Proceedings of the 2024 on ACM SIGSAC Conference on Computer and Communications Security, 2024

2023
Preface: RECOMB 2023 Special Issue.
J. Comput. Biol., November, 2023

The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks.
CoRR, 2023

Large Language Model Soft Ideologization via AI-Self-Consciousness.
CoRR, 2023

Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering.
CoRR, 2023

Sherlock on Specs: Building LTE Conformance Tests through Automated Reasoning.
Proceedings of the 32nd USENIX Security Symposium, 2023

Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models.
Proceedings of the 44th IEEE Symposium on Security and Privacy, 2023

STINMatch: Semi-Supervised Semantic-Topological Iteration Network for Financial Risk Detection via News Label Diffusion.
Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, 2023

2022
Locality-Sensitive Hashing-Based k-Mer Clustering for Identification of Differential Microbial Markers Related to Host Phenotype.
J. Comput. Biol., 2022

The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.
J. Am. Medical Informatics Assoc., 2022

Understanding Impacts of Task Similarity on Backdoor Attack and Detection.
CoRR, 2022

Seeing the Forest for the Trees: Understanding Security Hazards in the 3GPP Ecosystem through Intelligent Analysis on Change Requests.
Proceedings of the 31st USENIX Security Symposium, 2022

2021
Understanding TEE Containers, Easy to Use? Hard to Trust.
CoRR, 2021

Haplotype-based membership inference from summary genomic data.
Bioinform., 2021

Towards Fair Cross-Domain Adaptation via Generative Learning.
Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2021

Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection.
Proceedings of the 30th USENIX Security Symposium, 2021

Bookworm Game: Automatic Discovery of LTE Vulnerabilities Through Documentation Analysis.
Proceedings of the 42nd IEEE Symposium on Security and Privacy, 2021

Practical and Efficient in-Enclave Verification of Privacy Compliance.
Proceedings of the 51st Annual IEEE/IFIP International Conference on Dependable Systems and Networks, 2021

HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework.
Proceedings of the 14th IEEE International Conference on Cloud Computing, 2021

2020
Confidential Attestation: Efficient in-Enclave Verification of Privacy Policy Compliance.
CoRR, 2020

Bounding The Number of Linear Regions in Local Area for Neural Networks with ReLU Activations.
CoRR, 2020

Privacy-preserving construction of generalized linear mixed model for biomedical computation.
Bioinform., 2020

Overlap detection on long, error-prone sequencing reads via smooth q-gram.
Bioinform., 2020

Navigating Ethical Quandaries with the Privacy Dilemma of Biomedical Datasets.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Learning Structural Genetic Information via Graph Neural Embedding.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

A Pragmatic Approach to Membership Inferences on Machine Learning Models.
Proceedings of the IEEE European Symposium on Security and Privacy, 2020

2019
GenoPri'17: International Workshop on Genome Privacy and Security.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Algorithmic approaches to clonal reconstruction in heterogeneous cell populations.
Quant. Biol., 2019

Toward Scalable Fully Homomorphic Encryption Through Light Trusted Computing Assistance.
CoRR, 2019

Session Introduction.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

MBeacon: Privacy-Preserving Beacons for DNA Methylation Data.
Proceedings of the 26th Annual Network and Distributed System Security Symposium, 2019

2018
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome.
J. Comput. Biol., 2018

Understanding Membership Inferences on Well-Generalized Learning Models.
CoRR, 2018

Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
Bioinform., 2018

Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry.
Proceedings of the Research in Computational Molecular Biology, 2018

Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads.
Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

2017
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
J. Am. Medical Informatics Assoc., 2017

Improving de novo metatranscriptome assembly via machine learning algorithms.
Int. J. Comput. Biol. Drug Des., 2017

STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data.
BMC Bioinform., 2017

ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
Bioinform., 2017

Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX.
Proceedings of the 2017 ACM SIGSAC Conference on Computer and Communications Security, 2017

A Sparse Latent Regression Approach for Integrative Analysis of Glycomic and Glycotranscriptomic Data.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics.
PLoS Comput. Biol., 2016

Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis.
Bioinform., 2016

MGEScan: a Galaxy-based system for identifying retrotransposons in genomes.
Bioinform., 2016

On the Privacy Risks of Sharing Clinical Proteomics Data.
Proceedings of the Summit on Clinical Research Informatics, 2016

2015
Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery.
J. Am. Medical Informatics Assoc., 2015

Efficient Genome-Wide, Privacy-Preserving Similar Patient Query based on Private Edit Distance.
Proceedings of the 22nd ACM SIGSAC Conference on Computer and Communications Security, 2015

A maximum-likelihood approach to absolute protein quantification in mass spectrometry.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
A community assessment of privacy preserving techniques for human genomes.
BMC Medical Informatics Decis. Mak., 2014

Detection of Structural Variants Involving Repetitive Regions in the Reference Genome.
J. Comput. Biol., 2014

Gene finding in metatranscriptomic sequences.
BMC Bioinform., 2014

Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions.
Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014

Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Quasispecies reconstruction based on vertex coloring algorithms.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences.
PLoS Comput. Biol., 2013

Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry.
Bioinform., 2013

Improving phosphopeptide identification in shotgun proteomics by supervised filtering of peptide-spectrum matches.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
A <i>de Bruijn</i> Graph Approach to the Quantification of Closely-Related Genomes in a Microbial Community.
J. Comput. Biol., 2012

Detecting structural variants involving repetitive elements: capturing transposition events of IS elements in the genome of Escherichia coli.
BMC Bioinform., 2012

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data.
Bioinform., 2012

Large-Scale Privacy-Preserving Mapping of Human Genomic Sequences on Hybrid Clouds.
Proceedings of the 19th Annual Network and Distributed System Security Symposium, 2012

Privacy Protection in Sharing Personal Genome Sequencing Data.
Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
RAPSearch: a Fast Protein Similarity Search Tool for Short Reads.
BMC Bioinform., 2011

Enhanced peptide quantification using spectral count clustering and cluster abundance.
BMC Bioinform., 2011

Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

To Release or Not to Release: Evaluating Information Leaks in Aggregate Human-Genome Data.
Proceedings of the Computer Security - ESORICS 2011, 2011

2009
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics.
J. Comput. Biol., 2009

An Orfome Assembly Approach to Metagenomics Sequences Analysis.
J. Bioinform. Comput. Biol., 2009

Biomedical Case Studies in Data Intensive Computing.
Proceedings of the Cloud Computing, First International Conference, CloudCom 2009, Beijing, 2009

Privacy-preserving genomic computation through program specialization.
Proceedings of the 2009 ACM Conference on Computer and Communications Security, 2009

Learning your identity and disease from research papers: information leaks in genome wide association study.
Proceedings of the 2009 ACM Conference on Computer and Communications Security, 2009

2008
A machine-learning approach to combined evidence validation of genome assemblies.
Bioinform., 2008

Fast and accurate identification of semi-tryptic peptides in shotgun proteomics.
Bioinform., 2008

2007
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis.
Bioinform., 2007

Advancement in Protein Inference from Shotgun Proteomics Using Peptide Detectability.
Proceedings of the Biocomputing 2007, 2007

Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments.
Proceedings of the Analysis of Biological Data: A Soft Computing Approach, 2007

2006
Consensus Folding of Unaligned RNA Sequences Revisited.
J. Comput. Biol., 2006

An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences.
Proceedings of the Data Mining and Bioinformatics, First International Workshop, 2006

A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry.
Proceedings of the Systems Biology and Computational Proteomics, 2006

A Machine Learning Approach to Predicting Peptide Fragmentation Spectra.
Proceedings of the Biocomputing 2006, 2006

A computational approach toward label-free protein quantification using predicted peptide detectability.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
Automated interpretation of MS/MS spectra of oligosaccharides.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004
MedBlast: searching articles related to a biological sequence.
Bioinform., 2004

Fragment assembly with short reads.
Bioinform., 2004

<i>De novo</i> repeat classification and fragment assembly.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2002
Splicing graphs and EST assembly problem.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001
A New Estimator of Significance of Correlation in Time Series Data.
J. Comput. Biol., 2001

A new approach to fragment assembly in DNA sequencing.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Fragment assembly with double-barreled data.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001


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