Gustavo Stolovitzky

Affiliations:
  • IBM Thomas J. Watson Research Center, Yorktown Heights, NY, USA
  • Icahn School of Medicine at Mount Sinai, Department of Genetics and Genomic Sciences, New York City, NY, USA
  • Yale University, New Haven, CT, USA (PhD 1994)


According to our database1, Gustavo Stolovitzky authored at least 38 papers between 1999 and 2024.

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Bibliography

2024
AI Competitions and Benchmarks, Practical issues: Proposals, grant money, sponsors, prizes, dissemination, publicity.
CoRR, 2024

2023
AI Competitions and Benchmarks: The life cycle of challenges and benchmarks.
CoRR, 2023

2021
NeurIPS 2022 Competition Track Revised Selected Papers.
Proceedings of the NeurIPS 2022 Competition Track, 2021

2020
R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics.
J. Comput. Biol., 2020

NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019
Unsupervised Evaluation and Weighted Aggregation of Ranked Classification Predictions.
J. Mach. Learn. Res., 2019

2018
Unsupervised Evaluation and Weighted Aggregation of Ranked Predictions.
CoRR, 2018

Predictive Linguistic Markers of Suicidality in Poets.
Proceedings of the 12th IEEE International Conference on Semantic Computing, 2018

Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2016
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.
PLoS Comput. Biol., 2016

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.
BMC Bioinform., 2016

2015
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.
PLoS Comput. Biol., 2015

Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue.
J. Comput. Biol., 2015

DREAMTools: a Python package for scoring collaborative challenges.
F1000Research, 2015

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.
Bioinform., 2015

A crowd-sourcing approach for the construction of species-specific cell signaling networks.
Bioinform., 2015

2014
RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue.
J. Comput. Biol., 2014

Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria.
BMC Syst. Biol., 2014

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.
BMC Syst. Biol., 2014

DREAM 9: An Acute Myeloid Leukemia Prediction Big Data Challenge.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling.
PLoS Comput. Biol., 2013

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue.
J. Comput. Biol., 2013

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.
Bioinform., 2013

2012
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue.
J. Comput. Biol., 2012

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.
Bioinform., 2012

2008
Stability and Time-Delay Modeling of Negative Feedback Loops.
Proc. IEEE, 2008

A noise model for mass spectrometry based proteomics.
Bioinform., 2008

2007
ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding.
BMC Bioinform., 2007

Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications.
Bioinform., 2007

2006
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context.
BMC Bioinform., 2006

2005
Reconstructing biological networks using conditional correlation analysis.
Bioinform., 2005

A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

2004
Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data.
Bioinform., 2004

2003
Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data?
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2000
Systematic and Fully Automated Identification of Protein Sequence Patterns.
J. Comput. Biol., 2000

Systematic and automated discovery of patterns in PROSITE families.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

Analysis of Gene Expression Microarrays for Phenotype Classification.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999
Sequence homology detection through large scale pattern discovery.
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999


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