Guo-Wei Wei
Orcid: 0000-0002-5781-2937Affiliations:
- Michigan State University, East Lansing, MI, USA
- National University of Singapore, Singapore (former)
According to our database1,
Guo-Wei Wei
authored at least 129 papers
between 2002 and 2024.
Collaborative distances:
Collaborative distances:
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Bibliography
2024
Mach. Learn., October, 2024
Integration of persistent Laplacian and pre-trained transformer for protein solubility changes upon mutation.
Comput. Biol. Medicine, February, 2024
Multiscale topology-enabled structure-to-sequence transformer for protein-ligand interaction predictions.
Nat. Mac. Intell., 2024
Evaluation of AlphaFold 3's Protein-Protein Complexes for Predicting Binding Free Energy Changes upon Mutation.
J. Chem. Inf. Model., 2024
J. Chem. Inf. Model., 2024
Preprocessing of Single Cell RNA Sequencing Data Using Correlated Clustering and Projection.
J. Chem. Inf. Model., 2024
J. Chem. Inf. Model., 2024
J. Comput. Chem., 2024
Analyzing single cell RNA sequencing with topological nonnegative matrix factorization.
J. Comput. Appl. Math., 2024
Graph-Based Bidirectional Transformer Decision Threshold Adjustment Algorithm for Class-Imbalanced Molecular Data.
CoRR, 2024
CoRR, 2024
Preventing future zoonosis: SARS-CoV-2 mutations enhance human-animal cross-transmission.
Comput. Biol. Medicine, 2024
Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing data.
Comput. Biol. Medicine, 2024
K-nearest-neighbors induced topological PCA for single cell RNA-sequence data analysis.
Comput. Biol. Medicine, 2024
Proceedings of the SIGGRAPH Asia 2024 Conference Papers, 2024
Proceedings of the Forty-first International Conference on Machine Learning, 2024
2023
J. Chem. Inf. Model., December, 2023
ChatGPT in Drug Discovery: A Case Study on Anticocaine Addiction Drug Development with Chatbots.
J. Chem. Inf. Model., November, 2023
Editorial: Harnessing the Power of Large Language Model-Based Chatbots for Scientific Discovery.
J. Chem. Inf. Model., September, 2023
Comput. Biol. Medicine, September, 2023
Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models.
Briefings Bioinform., September, 2023
Comput. Biol. Medicine, June, 2023
Machine-learning analysis of opioid use disorder informed by MOR, DOR, KOR, NOR and ZOR-based interactome networks.
Comput. Biol. Medicine, May, 2023
Integrating transformer and autoencoder techniques with spectral graph algorithms for the prediction of scarcely labeled molecular data.
Comput. Biol. Medicine, February, 2023
Virtual screening of DrugBank database for hERG blockers using topological Laplacian-assisted AI models.
Comput. Biol. Medicine, February, 2023
Multiscale Topology in Interactomic Network: From Transcriptome to Antiaddiction Drug Repurposing.
CoRR, 2023
CoRR, 2023
Chatbots in Drug Discovery: A Case Study on Anti-Cocaine Addiction Drug Development with ChatGPT.
CoRR, 2023
Machine Learning Study of the Extended Drug-target Interaction Network informed by Pain Related Voltage-Gated Sodium Channels.
CoRR, 2023
Multi-objective Molecular Optimization for Opioid Use Disorder Treatment Using Generative Network Complex.
CoRR, 2023
2022
The (Re)-Evolution of Quantitative Structure-Activity Relationship (QSAR) Studies Propelled by the Surge of Machine Learning Methods.
J. Chem. Inf. Model., 2022
J. Chem. Inf. Model., 2022
Omicron Variant (B.1.1.529): Infectivity, Vaccine Breakthrough, and Antibody Resistance.
J. Chem. Inf. Model., 2022
Mathematical artificial intelligence design of mutation-proof COVID-19 monoclonal antibodies.
Commun. Inf. Syst., 2022
Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants.
Comput. Biol. Medicine, 2022
2021
J. Chem. Inf. Model., 2021
SARS-CoV-2 becoming more infectious as revealed by algebraic topology and deep learning.
Commun. Inf. Syst., 2021
AweGNN: Auto-parametrized weighted element-specific graph neural networks for molecules.
Comput. Biol. Medicine, 2021
Comput. Biol. Medicine, 2021
2020
SIAM J. Math. Data Sci., 2020
A topology-based network tree for the prediction of protein-protein binding affinity changes following mutation.
Nat. Mach. Intell., 2020
Decoding SARS-CoV-2 Transmission and Evolution and Ramifications for COVID-19 Diagnosis, Vaccine, and Medicine.
J. Chem. Inf. Model., 2020
J. Chem. Inf. Model., 2020
J. Chem. Inf. Model., 2020
J. Chem. Inf. Model., 2020
J. Comput. Aided Mol. Des., 2020
Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis.
J. Appl. Comput. Topol., 2020
2019
ACM Trans. Graph., 2019
AGL-Score: Algebraic Graph Learning Score for Protein-Ligand Binding Scoring, Ranking, Docking, and Screening.
J. Chem. Inf. Model., 2019
Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges.
J. Comput. Aided Mol. Des., 2019
Commun. Inf. Syst., 2019
2018
Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening.
PLoS Comput. Biol., 2018
Quantitative Toxicity Prediction Using Topology Based Multitask Deep Neural Networks.
J. Chem. Inf. Model., 2018
TopP-S: Persistent homology-based multi-task deep neural networks for simultaneous predictions of partition coefficient and aqueous solubility.
J. Comput. Chem., 2018
J. Comput. Chem., 2018
Commun. Inf. Syst., 2018
Protein pocket detection via convex hull surface evolution and associated Reeb graph.
Bioinform., 2018
2017
J. Chem. Inf. Model., July, 2017
TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.
PLoS Comput. Biol., 2017
J. Comput. Chem., 2017
The impact of surface area, volume, curvature, and Lennard-Jones potential to solvation modeling.
J. Comput. Chem., 2017
J. Comput. Appl. Math., 2017
J. Comput. Appl. Math., 2017
Comparison of multi-task convolutional neural network (MT-CNN) and a few other methods for toxicity prediction.
CoRR, 2017
Feature functional theory - binding predictor (FFT-BP) for the blind prediction of binding free energies.
CoRR, 2017
Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology.
Bioinform., 2017
2016
Flexibility-rigidity index for protein-nucleic acid flexibility and fluctuation analysis.
J. Comput. Chem., 2016
2015
J. Comput. Phys., 2015
J. Comput. Phys., 2015
J. Comput. Chem., 2015
J. Comput. Appl. Math., 2015
2014
J. Comput. Phys., 2014
A Galerkin formulation of the MIB method for three dimensional elliptic interface problems.
Comput. Math. Appl., 2014
2013
J. Comput. Phys., 2013
A molecular level prototype for mechanoelectrical transducer in mammalian hair cells.
J. Comput. Neurosci., 2013
J. Comput. Chem., 2013
J. Comput. Chem., 2013
2012
J. Sci. Comput., 2012
Adaptively deformed mesh based interface method for elliptic equations with discontinuous coefficients.
J. Comput. Phys., 2012
Int. J. Biomed. Imaging, 2012
2011
J. Comput. Phys., 2011
J. Comput. Phys., 2011
2010
Modeling and simulation of electronic structure, material interface and random doping in nano-electronic devices.
J. Comput. Phys., 2010
2008
J. Comput. Chem., 2008
2007
Matched interface and boundary (MIB) method for elliptic problems with sharp-edged interfaces.
J. Comput. Phys., 2007
On the validity of "A proof that the discrete singular convolution (DSC)/Lagrange-distributed approximation function (LDAF) method is inferior to high order finite differences".
J. Comput. Phys., 2007
2006
High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources.
J. Comput. Phys., 2006
On the fictitious-domain and interpolation formulations of the matched interface and boundary (MIB) method.
J. Comput. Phys., 2006
Int. J. Biomed. Imaging, 2006
2005
2003
Comparison of the Discrete Singular Convolution and Three Other Numerical Schemes for Solving Fisher's Equation.
SIAM J. Sci. Comput., 2003
2002