Guo-Cheng Yuan

According to our database, Guo-Cheng Yuan authored at least 20 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Orthogonal multimodality integration and clustering in single-cell data.

Yufang Liu, Yongkai Chen, Haoran Lu, Wenxuan Zhong, Guo-Cheng Yuan, Ping Ma

BMC Bioinform., December, 2024

2021

CUT&RUNTools 2.0: a pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis.

Fulong Yu, Vijay G. Sankaran, Guo-Cheng Yuan

Bioinform., 2021

2020

GiniClust3: a fast and memory-efficient tool for rare cell type identification.

Rui Dong, Guo-Cheng Yuan

BMC Bioinform., 2020

2019

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson

Nat., 2019

BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells.

David N. Debruyne, Ruben Dries, Satyaki Sengupta, Davide Seruggia, Yang Gao, Bandana Sharma, Hao Huang, Lisa Moreau, Michael McLane, Daniel S. Day, Eugenio Marco, Ting Chen, Nathanael S. Gray, Kwok-Kin Wong, Stuart H. Orkin, Guo-Cheng Yuan, Richard A. Young, Rani E. George

Nat., 2019

RESCUE: imputing dropout events in single-cell RNA-sequencing data.

Sam Tracy, Guo-Cheng Yuan, Ruben Dries

BMC Bioinform., 2019

Session introduction.

Lana X. Garmire, Guo-Cheng Yuan, Rong Fan, Gene W. Yeo, John Quackenbush

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements.

Luca Pinello, Rick Farouni, Guo-Cheng Yuan

Bioinform., 2018

2015

A network model for angiogenesis in ovarian cancer.

Kimberly Glass, John Quackenbush, Dimitrios Spentzos, Benjamin Haibe-Kains, Guo-Cheng Yuan

BMC Bioinform., 2015

2014

Sexually-dimorphic targeting of functionally-related genes in COPD.

Kimberly Glass, John Quackenbush, Edwin K. Silverman, Bartolome Celli, Stephen I. Rennard, Guo-Cheng Yuan, Dawn L. DeMeo

BMC Syst. Biol., 2014

Applications of alignment-free methods in epigenomics.

Luca Pinello, Giosuè Lo Bosco, Guo-Cheng Yuan

Briefings Bioinform., 2014

2011

A motif-independent metric for DNA sequence specificity.

Luca Pinello, Giosuè Lo Bosco, Bret M. Hanlon, Guo-Cheng Yuan

BMC Bioinform., 2011

Workshop: Targeting mechanism of epigenetic factors.

Guo-Cheng Yuan

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Prediction of Epigenetic Target Sites by Using Genomic DNA Sequence.

Guo-Cheng Yuan

Proceedings of the Handbook of Research on Computational and Systems Biology, 2011

2010

A hidden Markov model for detecting multi-gene chromatin domains.

Jessica L. Larson, Guo-Cheng Yuan

BMC Bioinform., 2010

Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model.

Jessica L. Larson, Guo-Cheng Yuan

BMC Bioinform., 2010

2009

Targeted Recruitment of Histone Modifications in Humans Predicted by Genomic Sequences.

Guo-Cheng Yuan

J. Comput. Biol., 2009

2008

Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion.

Guo-Cheng Yuan, Jun S. Liu

PLoS Comput. Biol., 2008

2007

A New Multi-Layers Method to Analyze Gene Expression.

Davide F. V. Corona, Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello, Guo-Cheng Yuan

Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2007

Statistial Analysis of nucleosome occupancy and histone modification data.

Guo-Cheng Yuan, Jun S. Liu

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007