Gully A. P. C. Burns

According to our database, Gully A. P. C. Burns authored at least 54 papers between 1999 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science.

José Luis Ambite, Lily Fierro, Jonathan Gordon, Gully A. P. C. Burns, Florian Geigl, Kristina Lerman, John D. Van Horn

IEEE Trans. Emerg. Top. Comput., 2021

Standardization of assay representation in the Ontology for Biomedical Investigations.

Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.

Database J. Biol. Databases Curation, 2021

Scientific Discourse Tagging for Evidence Extraction.

Xiangci Li, Gully A. Burns, Nanyun Peng

Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume, 2021

MELINDA: A Multimodal Dataset for Biomedical Experiment Method Classification.

Te-Lin Wu, Shikhar Singh, Sayan Paul, Gully A. Burns, Nanyun Peng

Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

A Paragraph-level Multi-task Learning Model for Scientific Fact-Verification.

Xiangci Li, Gully A. Burns, Nanyun Peng

Proceedings of the Workshop on Scientific Document Understanding co-located with 35th AAAI Conference on Artificial Inteligence, 2021

2019

Advancing the international data science workforce through shared training and education.

John D. Van Horn, Sumiko Abe, José Luis Ambite, Teresa K. Attwood, Niall Beard, Louisa Bellis, Avnish Bhattrai, Alex A. T. Bui, Gully Burns, Lily Fierro, Jonathan Gordon, Jeffrey S. Grethe, Jeana Kamdar, Xiaoyu Lei, Kristina Lerman, Annette McGrath, Nicola J. Mulder, Caroline O'Driscoll, Crystal Stewart, Sonika Tyagi

F1000Research, 2019

Discourse Tagging for Scientific Evidence Extraction.

Xiangci Li, Gully A. Burns, Nanyun Peng

CoRR, 2019

Building deep learning models for evidence classification from the open access biomedical literature.

Gully A. Burns, Xiangci Li, Nanyun Peng

Database J. Biol. Databases Curation, 2019

Layout-aware Subfigure Decomposition for Complex Figures in the Biomedical Literature.

Xiangyang Shi, Yue Wu, Huaigu Cao, Gully Burns, Prem Natarajan

Proceedings of the IEEE International Conference on Acoustics, 2019

Linking Educational Resources on Data Science.

José Luis Ambite, Jonathan Gordon, Lily Fierro, Gully Burns, Joel Mathew

Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018

Towards Evidence Extraction: Analysis of Scientific Figures from Studies of Molecular Interactions.

Gully Burns, Xiangyang Shi, Yue Wu, Huaigu Cao, Prem Natarajan

Proceedings of the Emerging Topics in Semantic Technologies, 2018

Democratizing data science through data science training.

John Darrell Van Horn, Lily Fierro, Jeana Kamdar, Jonathan Gordon, Crystal Stewart, Avnish Bhattrai, Sumiko Abe, Xiaoxiao Lei, Caroline O'Driscoll, Aakanchha Sinha, Priyambada Jain, Gully Burns, Kristina Lerman, José Luis Ambite

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017

Experiment Segmentation in Scientific Discourse as Clause-level Structured Prediction using Recurrent Neural Networks.

Pradeep Dasigi, Gully A. P. C. Burns, Eduard H. Hovy, Anita de Waard

CoRR, 2017

BD2K ERuDIte: the Educational Resource Discovery Index for Data Science.

José Luis Ambite, Lily Fierro, Florian Geigl, Jonathan Gordon, Gully A. P. C. Burns, Kristina Lerman, John D. Van Horn

Proceedings of the 26th International Conference on World Wide Web Companion, 2017

Extracting Evidence Fragments for Distant Supervision of Molecular Interactions.

Gully Burns, Pradeep Dasigi, Eduard H. Hovy

Proceedings of the First Workshop on Enabling Open Semantic Science co-located with 16th International Semantic Web Conference (ISWC 2017), 2017

Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration.

Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters

Proceedings of Workshops and Tutorials of the 9th International Conference on Knowledge Capture (K-CAP2017), 2017

An Investigation into the Pedagogical Features of Documents.

Emily Sheng, Prem Natarajan, Jonathan Gordon, Gully Burns

Proceedings of the 12th Workshop on Innovative Use of NLP for Building Educational Applications, 2017

Structured Generation of Technical Reading Lists.

Jonathan Gordon, Stephen Aguilar, Emily Sheng, Gully Burns

Proceedings of the 12th Workshop on Innovative Use of NLP for Building Educational Applications, 2017

The BD2K Training Coordinating Center's Data Science Education Platform.

José Luis Ambite, Lily T. Fierro, Florian Geigl, Jonathan Gordon, Gully A. P. C. Burns, Kristina Lerman, Jeana Kamdar, Crystal Stewart, Avnish Bhattrai, Xiaoyu Lei, Sumiko Abe, John D. Van Horn

Proceedings of the AMIA 2017, 2017

2016

Automated detection of discourse segment and experimental types from the text of cancer pathway results sections.

Gully A. P. C. Burns, Pradeep Dasigi, Anita de Waard, Eduard H. Hovy

Database J. Biol. Databases Curation, 2016

Abstract Meaning Representations as Linked Data.

Gully A. P. C. Burns, Ulf Hermjakob, José Luis Ambite

Proceedings of the Semantic Web - ISWC 2016, 2016

Cycles of Scientific Investigation in Discourse - Machine Reading Methods for the Primary Research Contributions of a Paper.

Gully A. P. C. Burns, Anita de Waard, Pradeep Dasigi, Eduard H. Hovy

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Modeling Concept Dependencies in a Scientific Corpus.

Jonathan Gordon, Linhong Zhu, Aram Galstyan, Prem Natarajan, Gully Burns

Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics, 2016

2014

Reports on the 2013 AAAI Fall Symposium Series.

Gully Burns, Yolanda Gil, Yan Liu, Natalia Villanueva-Rosales, Sebastian Risi, Joel Lehman, Jeff Clune, Christian Lebiere, Paul S. Rosenbloom, Frank van Harmelen, James A. Hendler, Pascal Hitzler, Krzysztof Janowicz, Samarth Swarup

AI Mag., 2014

2013

Towards structured sharing of raw and derived neuroimaging data across existing resources.

David B. Keator, Karl G. Helmer, Jason Steffener, Jessica A. Turner, Theo G. M. van Erp, Syam Gadde, Naveen Ashish, Gully A. P. C. Burns, B. Nolan Nichols

NeuroImage, 2013

Modeling functional Magnetic Resonance Imaging (fMRI) experimental variables in the Ontology of Experimental Variables and Values (OoEVV).

Gully A. P. C. Burns, Jessica A. Turner

NeuroImage, 2013

Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences.

Kyle H. Ambert, Aaron M. Cohen, Gully A. P. C. Burns, Eilis Boudreau, M. Kemal Sönmez

Frontiers Neuroinformatics, 2013

SKIMMR: machine-aided skim-reading.

Vít Novácek, Gully Burns

Proceedings of the 18th International Conference on Intelligent User Interfaces, 2013

Preface.

Gully A. P. C. Burns, Yolanda Gil, Yan Liu, Natalia Villanueva-Rosales

Proceedings of the 2013 AAAI Fall Symposia, Arlington, Virginia, USA, November 15-17, 2013, 2013

Organizing Committee.

Gully A. P. C. Burns, Yolanda Gil, Yan Liu, Natalia Villanueva-Rosales

Proceedings of the 2013 AAAI Fall Symposia, Arlington, Virginia, USA, November 15-17, 2013, 2013

Finna: A Paragraph Prioritization System for Biocuration in the Neurosciences.

Kyle H. Ambert, Aaron M. Cohen, Gully A. P. C. Burns, Eilis Boudreau, M. Kemal Sönmez

Proceedings of the 2013 AAAI Fall Symposia, Arlington, Virginia, USA, November 15-17, 2013, 2013

2012

Layout-aware text extraction from full-text PDF of scientific articles.

Cartic Ramakrishnan, Abhishek Patnia, Eduard H. Hovy, Gully A. P. C. Burns

Source Code Biol. Medicine, 2012

Towards structured sharing of raw and derived neuroimaging data across existing resources

David B. Keator, Karl G. Helmer, Jason Steffener, Jessica A. Turner, Theo G. M. van Erp, Syam Gadde, Naveen Ashish, Gully A. P. C. Burns, B. Nolan Nichols, Satrajit S. Ghosh

CoRR, 2012

A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012).

Yongqun He, Luca Toldo, Gully Burns, Cui Tao, Darrell R. Abernethy

J. Biomed. Semant., 2012

Text mining for the biocuration workflow.

Lynette Hirschman, Gully A. P. C. Burns, Martin Krallinger, Cecilia N. Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert S. Nash, Anne-Lise Veuthey, Thomas C. Wiegers, Andrew G. Winter

Database J. Biol. Databases Curation, 2012

Preliminary Meta-Analyses of Experimental Design with Examples from HIV Vaccine Protection Studies.

Marcelo Tallis, Drashti Dave, Gully A. P. C. Burns

Proceedings of the Discovery Informatics: The Role of AI Research in Innovating Scientific Processes, 2012

2011

Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).

Karl G. Helmer, José Luis Ambite, Joseph Ames, Rachana Ananthakrishnan, Gully Burns, Ann L. Chervenak, Ian T. Foster, Lee Liming, David B. Keator, Fabio Macciardi, Ravi K. Madduri, John-Paul Navarro, Steven G. Potkin, Bruce R. Rosen, Seth Ruffins, Robert Schuler, Jessica A. Turner, Arthur W. Toga, Christina Williams, Carl Kesselman

J. Am. Medical Informatics Assoc., 2011

Knowledge Synthesis with Maps of Neural Connectivity.

Marcelo Tallis, Richard H. Thompson, Thomas A. Russ, Gully A. P. C. Burns

Frontiers Neuroinformatics, 2011

Knowledge Engineering Tools for Reasoning with Scientific Observations and Interpretations: a Neural Connectivity Use Case.

Thomas A. Russ, Cartic Ramakrishnan, Eduard H. Hovy, Mihail Bota, Gully A. P. C. Burns

BMC Bioinform., 2011

The Role of Information Extraction in the Design of a Document Triage Application for Biocuration.

Sandeep Pokkunuri, Cartic Ramakrishnan, Ellen Riloff, Eduard H. Hovy, Gully Burns

Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

2009

Biomedical knowledge engineering tools based on experimental design: a case study based on neuroanatomical tract-tracing experiments.

Gully A. P. C. Burns, Thomas A. Russ

Proceedings of the 5th International Conference on Knowledge Capture (K-CAP 2009), 2009

The NIH Visual Browser: An Interactive Visualization of Biomedical Research.

Bruce William Herr II, Edmund M. Talley, Gully A. P. C. Burns, David Newman, Gavin LaRowe

Proceedings of the 13th International Conference on Information Visualisation, 2009

2008

Intelligent Approaches to Mining the Primary Research Literature: Techniques, Systems, and Examples.

Gully Burns, Donghui Feng, Eduard H. Hovy

Proceedings of the Computational Intelligence in Medical Informatics, 2008

Towards Automated Semantic Analysis on Biomedical Research Articles.

Donghui Feng, Gully Burns, Jingbo Zhu, Eduard H. Hovy

Proceedings of the Third International Joint Conference on Natural Language Processing, 2008

Adaptive Information Extraction for Complex Biomedical Tasks.

Donghui Feng, Gully Burns, Eduard H. Hovy

Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

2007

Extracting Data Records from Unstructured Biomedical Full Text.

Donghui Feng, Gully Burns, Eduard H. Hovy

Proceedings of the EMNLP-CoNLL 2007, 2007

Infrastructure for Annotation-Driven Information Extraction from the Primary Scientific Literature: Principles and Practice.

Gully Burns, Donghui Feng, Tommy Ingulfsen, Eduard H. Hovy

Proceedings of the 2007 IEEE International Conference on Services Computing, 2007

2006

NeuroScholar's electronic laboratory notebook and its application to neuroendocrinology.

Arshad M. Khan, Joel D. Hahn, Wei-Cheng Cheng, Alan G. Watts, Gully A. P. C. Burns

Neuroinformatics, 2006

The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases.

Gully A. P. C. Burns, Wei-Cheng Cheng, Richard H. Thompson, Larry W. Swanson

BMC Bioinform., 2006

2003

Tools and approaches for the construction of knowledge models from the neuroscientific literature.

Gully A. P. C. Burns, Arshad M. Khan, Shahram Ghandeharizadeh, Mark A. O'Neill, Yi-Shin Chen

Neuroinformatics, 2003

2002

Software engineering tools and approaches for neuroinformatics: the design and implementation of the View-Primitive Data Model framework (VPDMf).

Gully A. P. C. Burns, Fang Bian, Wei-Cheng Cheng, Shyam Kapadia, Cyrus Shahabi, Shahram Ghandeharizadeh

Neurocomputing, 2002

2001

Towards a federated neuroscientific knowledge management system using brain atlases.

Gully Burns, Klaas E. Stephan, Bertram Ludäscher, Amarnath Gupta, Rolf Kötter

Neurocomputing, 2001

1999

Neuroscholar 1.00, a neuroinformatics databasing website.

Gully Burns

Neurocomputing, 1999

Visualization of Spatial Neuroanatomical Data.

Cyrus Shahabi, Ali E. Dashti, Gully A. P. C. Burns, Shahram Ghandeharizadeh, Ning Jiang, Larry W. Swanson

Proceedings of the Visual Information and Information Systems, 1999