Guixia Liu
Orcid: 0000-0001-9648-844X
According to our database1,
Guixia Liu
authored at least 87 papers
between 2005 and 2024.
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Bibliography
2024
DBPP-Predictor: a novel strategy for prediction of chemical drug-likeness based on property profiles.
J. Cheminformatics, December, 2024
J. Chem. Inf. Model., January, 2024
mtADENet: A novel interpretable method integrating multiple types of network-based inference approaches for prediction of adverse drug events.
Comput. Biol. Medicine, January, 2024
XGraphCDS: An explainable deep learning model for predicting drug sensitivity from gene pathways and chemical structures.
Comput. Biol. Medicine, January, 2024
Unraveling the Ligand-Binding Sites of CYP3A4 by Molecular Dynamics Simulations with Solvent Probes.
J. Chem. Inf. Model., 2024
Weighted window attention and recover feature resolution-based network for deformable abdominal image registration.
Biomed. Signal Process. Control., 2024
MetaPredictor: <i>in silico</i> prediction of drug metabolites based on deep language models with prompt engineering.
Briefings Bioinform., 2024
ToxGIN: an <i>In silico</i> prediction model for peptide toxicity via graph isomorphism networks integrating peptide sequence and structure information.
Briefings Bioinform., 2024
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024
2023
Chemical rules for optimization of chemical mutagenicity via matched molecular pairs analysis and machine learning methods.
J. Cheminformatics, December, 2023
A seed expansion-based method to identify essential proteins by integrating protein-protein interaction sub-networks and multiple biological characteristics.
BMC Bioinform., December, 2023
Identification of Robust Antibiotic Subgroups by Integrating Multi-Species Drug-Drug Interactions.
J. Chem. Inf. Model., August, 2023
Comput. Biol. Medicine, August, 2023
Pharmaceutical Cocrystal Discovery via 3D-SMINBR: A New Network Recommendation Tool Augmented by 3D Molecular Conformations.
J. Chem. Inf. Model., July, 2023
Prediction of Sites of Metabolism of CYP3A4 Substrates Utilizing Docking-Derived Geometric Features.
J. Chem. Inf. Model., July, 2023
MFSJMI: Multi-label feature selection considering join mutual information and interaction weight.
Pattern Recognit., June, 2023
Investigation of Anti-Alzheimer's Mechanisms of Sarsasapogenin Derivatives by Network-Based Combining Structure-Based Methods.
J. Chem. Inf. Model., May, 2023
ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types.
Comput. Biol. Medicine, May, 2023
Appl. Intell., May, 2023
Appl. Intell., May, 2023
Identification of vital chemical information via visualization of graph neural networks.
Briefings Bioinform., January, 2023
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
RFR-WWANet: Weighted Window Attention-Based Recovery Feature Resolution Network for Unsupervised Image Registration.
CoRR, 2023
2022
Knowl. Based Syst., 2022
J. Chem. Inf. Model., 2022
IDL-PPBopt: A Strategy for Prediction and Optimization of Human Plasma Protein Binding of Compounds via an Interpretable Deep Learning Method.
J. Chem. Inf. Model., 2022
Discovery of New Estrogen-Related Receptor α Agonists via a Combination Strategy Based on Shape Screening and Ensemble Docking.
J. Chem. Inf. Model., 2022
J. Cheminformatics, 2022
In silico prediction of UGT-mediated metabolism in drug-like molecules via graph neural network.
J. Cheminformatics, 2022
ADENet: a novel network-based inference method for prediction of drug adverse events.
Briefings Bioinform., 2022
Profiling prediction of nuclear receptor modulators with multi-task deep learning methods: toward the virtual screening.
Briefings Bioinform., 2022
Briefings Bioinform., 2022
TD-Net: unsupervised medical image registration network based on Transformer and CNN.
Appl. Intell., 2022
2021
Pattern Recognit., 2021
SMINBR: An Integrated Network and Chemoinformatics Tool Specialized for Prediction of Two-Component Crystal Formation.
J. Chem. Inf. Model., 2021
Discovery of Natural Products Targeting NQO1 via an Approach Combining Network-Based Inference and Identification of Privileged Substructures.
J. Chem. Inf. Model., 2021
Pathway-Based Drug Repurposing with DPNetinfer: A Method to Predict Drug-Pathway Associations via Network-Based Approaches.
J. Chem. Inf. Model., 2021
Drug repositioning by prediction of drug's anatomical therapeutic chemical code via network-based inference approaches.
Briefings Bioinform., 2021
2020
NetInfer: A Web Server for Prediction of Targets and Therapeutic and Adverse Effects via Network-Based Inference Methods.
J. Chem. Inf. Model., 2020
Computational Insights into Molecular Activation and Positive Cooperative Mechanisms of FFAR1 Modulators.
J. Chem. Inf. Model., 2020
Computational Insight into the Allosteric Activation Mechanism of Farnesoid X Receptor.
J. Chem. Inf. Model., 2020
A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks.
Inf. Sci., 2020
SHEIB-AGM: A Novel Stochastic Approach for Detecting High-Order Epistatic Interactions Using Bioinformation With Automatic Gene Matrix in Genome-Wide Association Studies.
IEEE Access, 2020
A Novel Prediction Method for ATP-Binding Sites From Protein Primary Sequences Based on Fusion of Deep Convolutional Neural Network and Ensemble Learning.
IEEE Access, 2020
2019
Insights into the antineoplastic mechanism of Chelidonium majus via systems pharmacology approach.
Quant. Biol., 2019
Pattern Recognit., 2019
In Silico Prediction of Endocrine Disrupting Chemicals Using Single-Label and Multilabel Models.
J. Chem. Inf. Model., 2019
Correction to "admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties".
J. Chem. Inf. Model., 2019
J. Chem. Inf. Model., 2019
Identifying protein complexes based on an edge weight algorithm and core-attachment structure.
BMC Bioinform., 2019
admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties.
Bioinform., 2019
Proceedings of the Advances in Neural Networks - ISNN 2019, 2019
2018
J. Chem. Inf. Model., 2018
Multiclassification Prediction of Enzymatic Reactions for Oxidoreductases and Hydrolases Using Reaction Fingerprints and Machine Learning Methods.
J. Chem. Inf. Model., 2018
Predicting overlapping protein complexes based on core-attachment and a local modularity structure.
BMC Bioinform., 2018
MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization.
BMC Bioinform., 2018
2017
Nucleic Acids Res., 2017
Computational Investigation of Ligand Binding to the Peripheral Site in CYP3A4: Conformational Dynamics and Inhibitor Discovery.
J. Chem. Inf. Model., 2017
SDTNBI: an integrated network and chemoinformatics tool for systematic prediction of drug-target interactions and drug repositioning.
Briefings Bioinform., 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
A new approach to detect epistasis utilizing parallel implementation of ant colony optimization by MapReduce framework.
Int. J. Comput. Math., 2016
2014
<i>In Silico</i> Prediction of Chemical Acute Oral Toxicity Using Multi-Classification Methods.
J. Chem. Inf. Model., 2014
Proceedings of the International Conference on Internet Multimedia Computing and Service, 2014
2013
Prediction of Polypharmacological Profiles of Drugs by the Integration of Chemical, Side Effect, and Therapeutic Space.
J. Chem. Inf. Model., 2013
CChi: An efficient cloud epistasis test model in human genome wide association studies.
Proceedings of the 6th International Conference on Biomedical Engineering and Informatics, 2013
2012
Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference.
PLoS Comput. Biol., 2012
Unbinding Pathways of GW4064 from Human Farnesoid X Receptor As Revealed by Molecular Dynamics Simulations.
J. Chem. Inf. Model., 2012
Performance Evaluation of 2D Fingerprint and 3D Shape Similarity Methods in Virtual Screening.
J. Chem. Inf. Model., 2012
admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties.
J. Chem. Inf. Model., 2012
2011
Insights into Molecular Basis of Cytochrome P450 Inhibitory Promiscuity of Compounds.
J. Chem. Inf. Model., 2011
Classification of Cytochrome P450 Inhibitors and Noninhibitors Using Combined Classifiers.
J. Chem. Inf. Model., 2011
2010
J. Chem. Inf. Model., 2010
Algorithms Mol. Biol., 2010
Gene Regulatory Network Reconstruction with Multiple Dataset Fusion and Differential Equation.
Proceedings of the Fifth International Conference on Frontier of Computer Science and Technology, 2010
2009
Proceedings of the International Conference on Networked Computing and Advanced Information Management, 2009
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2009
2008
Proceedings of the 9th International Conference for Young Computer Scientists, 2008
2006
Proceedings of the Advances in Neural Networks - ISNN 2006, Third International Symposium on Neural Networks, Chengdu, China, May 28, 2006
Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory.
Proceedings of the Artificial Intelligence Applications and Innovations, 2006
Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory.
Proceedings of the Computational Intelligence and Bioinformatics, 2006
2005
Identification of Transcription Factor Binding Sites Using Hybrid Particle Swarm Optimization.
Proceedings of the Rough Sets, 2005
Prediction of Contact Maps in Proteins Based on Recurrent Neural Network with Bias Units.
Proceedings of the Advances in Neural Networks - ISNN 2005, Second International Symposium on Neural Networks, Chongqing, China, May 30, 2005