Gos Micklem

According to our database, Gos Micklem authored at least 34 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Unsupervised Pretraining for Fact Verification by Language Model Distillation.

Adrián Bazaga, Pietro Lio, Gos Micklem

Proceedings of the Twelfth International Conference on Learning Representations, 2024

Language Model Knowledge Distillation for Efficient Question Answering in Spanish.

Adrián Bazaga, Pietro Lio, Gos Micklem

Proceedings of the Second Tiny Papers Track at ICLR 2024, 2024

HyperBERT: Mixing Hypergraph-Aware Layers with Language Models for Node Classification on Text-Attributed Hypergraphs.

Adrián Bazaga, Pietro Lio, Gos Micklem

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024

2023

SQLformer: Deep Auto-Regressive Query Graph Generation for Text-to-SQL Translation.

Adrián Bazaga, Pietro Liò, Gos Micklem

CoRR, 2023

Unsupervised Fact Verification by Language Model Distillation.

Adrián Bazaga, Pietro Liò, Gos Micklem

CoRR, 2023

2022

HumanMine: advanced data searching, analysis and cross-species comparison.

Rachel Lyne, Adrián Bazaga, Daniela Butano, Sergio Contrino, Joshua Heimbach, Fengyuan Hu, Alex Kalderimis, Mike Lyne, Kevin Herald Reierskog, Radek Stepan, Julie M. Sullivan, Archie Wise, Yo Yehudi, Gos Micklem

Database J. Biol. Databases Curation, 2022

2021

Learning from learning machines: a new generation of AI technology to meet the needs of science.

Luca Pion-Tonachini, Kristofer E. Bouchard, Héctor García Martín, Sean Peisert, W. Bradley Holtz, Anil Aswani, Dipankar Dwivedi, Haruko M. Wainwright, Ghanshyam Pilania, Benjamin Nachman, Babetta L. Marrone, Nicola Falco, Prabhat, Daniel B. Arnold, Alejandro Wolf-Yadlin, Sarah Powers, Sharlee Climer, Quinn Jackson, Ty Carlson, Michael Sohn, Petrus H. Zwart, Neeraj Kumar, Amy Justice, Claire J. Tomlin, Daniel A. Jacobson, Gos Micklem, Georgios V. Gkoutos, Peter J. Bickel, Jean-Baptiste Cazier, Juliane Müller, Bobbie-Jo Webb-Robertson, Rick Stevens, Mark Anderson, Kenneth Kreutz-Delgado, Michael W. Mahoney, James B. Brown

CoRR, 2021

Translating synthetic natural language to database queries: a polyglot deep learning framework.

Adrián Bazaga, Nupur Gunwant, Gos Micklem

CoRR, 2021

2019

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.

Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi

F1000Research, 2019

InterMineR: an R package for InterMine databases.

Konstantinos A Kyritsis, Bing Wang, Julie M. Sullivan, Rachel Lyne, Gos Micklem

Bioinform., 2019

Implementing FAIR Principles in InterMine.

Daniela Butano, Justin Clark-Casey, Sergio Contrino, Joshua Heimbach, Rachel Lyne, Kevin Herald Reierskog, Julie M. Sullivan, Yo Yehudi, Gos Micklem

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

2018

The InterMine Android app: Cross-organism genomic data in your pocket.

Daria Komkova, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem

F1000Research, 2018

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard

BMC Bioinform., 2018

2017

Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure.

Clare Pacini, James W. Ajioka, Gos Micklem

BMC Bioinform., 2017

ComplexViewer: visualization of curated macromolecular complexes.

Colin W. Combe, Marine Sivade, Henning Hermjakob, Joshua Heimbach, Birgit H. M. Meldal, Gos Micklem, Sandra E. Orchard, Juri Rappsilber

Bioinform., 2017

2016

Making Linked Data SPARQL with the InterMine Biological Data Warehouse.

Maxime Déraspe, Gail Binkley, Daniela Butano, Matthew Chadwick, J. Michael Cherry, Justin Clark-Casey, Sergio Contrino, Jacques Corbeil, Joshua Heimbach, Kalpana Karra, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem, Michel Dumontier

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Semantic Research Platform for Model Organisms.

Maxime Déraspe, Kalpana Karra, Gail Binkley, Julie M. Sullivan, Gos Micklem, Jacques Corbeil, J. Michael Cherry, Michel Dumontier

Proceedings of the First International Workshop on Biomedical Data Integration and Discovery (BMDID 2016) co-located with The 15th International Semantic Web Conference (ISWC 2016), 2016

Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies.

David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden

Proceedings of the Tenth IEEE International Conference on Semantic Computing, 2016

2015

Araport: the Arabidopsis Information Portal.

Vivek Krishnakumar, Matthew R. Hanlon, Sergio Contrino, Erik S. Ferlanti, Svetlana Karamycheva, Maria Kim, Benjamin D. Rosen, Chia-Yi Cheng, Walter Moreira, Stephen A. Mock, Joseph Stubbs, Julie M. Sullivan, Konstantinos Krampis, Jason R. Miller, Gos Micklem, Matthew Vaughn, Christopher D. Town

Nucleic Acids Res., 2015

toxoMine: an integrated omics data warehouse for <i>Toxoplasma gondii</i> systems biology research.

David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden

Database J. Biol. Databases Curation, 2015

2014

InterMine: extensive web services for modern biology.

Alex Kalderimis, Rachel Lyne, Daniela Butano, Sergio Contrino, Mike Lyne, Joshua Heimbach, Fengyuan Hu, Richard N. Smith, Radek Stepan, Julie M. Sullivan, Gos Micklem

Nucleic Acids Res., 2014

<i>BioJS DAGViewer</i>: A reusable JavaScript component for displaying directed graphs.

Alex Kalderimis, Radek Stepan, Julie M. Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem

F1000Research, 2014

<i>BioJS InterMineTable Component</i>: A BioJS component for displaying data from InterMine compatible webservice endpoints.

Alex Kalderimis, Radek Stepan, Julie M. Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem

F1000Research, 2014

<i>BioJS InterMine List Analysis</i>: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints.

Alex Kalderimis, Radek Stepan, Julie M. Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem

F1000Research, 2014

2013

metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.

Mike Lyne, Richard N. Smith, Rachel Lyne, Jelena Aleksic, Fengyuan Hu, Alex Kalderimis, Radek Stepan, Gos Micklem

Database J. Biol. Databases Curation, 2013

2012

modMine: flexible access to modENCODE data.

Sergio Contrino, Richard N. Smith, Daniela Butano, Adrian Carr, Fengyuan Hu, Rachel Lyne, Kim Rutherford, Alex Kalderimis, Julie M. Sullivan, Seth Carbon, Ellen T. Kephart, Paul Lloyd, E. O. Stinson, Nicole L. Washington, Marc D. Perry, Peter Ruzanov, Zheng Zha, Suzanna E. Lewis, Lincoln D. Stein, Gos Micklem

Nucleic Acids Res., 2012

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.

Richard N. Smith, Jelena Aleksic, Daniela Butano, Adrian Carr, Sergio Contrino, Fengyuan Hu, Mike Lyne, Rachel Lyne, Alex Kalderimis, Kim Rutherford, Radek Stepan, Julie M. Sullivan, Matthew Wakeling, Xavier Watkins, Gos Micklem

Bioinform., 2012

YeastMine - an integrated data warehouse for <i>Saccharomyces cerevisiae</i> data as a multipurpose tool-kit.

Rama Balakrishnan, Julie Park, Kalpana Karra, Benjamin C. Hitz, Gail Binkley, Eurie L. Hong, Julie M. Sullivan, Gos Micklem, J. Michael Cherry

Database J. Biol. Databases Curation, 2012

2011

The impact of quantitative optimization of hybridization conditions on gene expression analysis.

Peter Sykacek, David P. Kreil, Lisa A. Meadows, Richard P. Auburn, Bettina Fischer, Steven Russell, Gos Micklem

BMC Bioinform., 2011

The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.

Nicole L. Washington, E. O. Stinson, Marc D. Perry, Peter Ruzanov, Sergio Contrino, Richard N. Smith, Zheng Zha, Rachel Lyne, Adrian Carr, Paul Lloyd, Ellen T. Kephart, Sheldon J. McKay, Gos Micklem, Lincoln D. Stein, Suzanna E. Lewis

Database J. Biol. Databases Curation, 2011

2007

New tools for self-organized pattern formation.

Kaj Bernhardt, Nikhilesh Chand, Elizabeth Carter, Jisun Lee, Yang Xu, Xueni Zhu, Duncan Rowe, James W. Ajioka, J. M. Gonçalves, Jim Haseloff, Gos Micklem

BMC Syst. Biol., 2007

Bayesian modelling of shared gene function.

Peter Sykacek, R. Clarkson, Cristin G. Print, R. A. Furlong, Gos Micklem

Bioinform., 2007

2005

A friendly statistics package for microarray analysis.

Peter Sykacek, R. A. Furlong, Gos Micklem

Bioinform., 2005

2003

Quantitative microarray spot profile optimization: A systematic evaluation of buffer/slide combinations.

David P. Kreil, Richard P. Auburn, Lisa A. Meadows, Steven Russell, Gos Micklem

Proceedings of the German Conference on Bioinformatics, 2003