Gordon K. Smyth

Orcid: 0000-0001-9221-2892

Affiliations:

University of Melbourne, Australia

According to our database¹, Gordon K. Smyth authored at least 30 papers between 1991 and 2025.

Collaborative distances:

Dijkstra number² of five.
Erdős number³ of four.

Timeline

1995

2000

2005

2010

2015

2020

2025

Legend:

Book

In proceedings

Article

PhD thesis

Dataset

Other

Bibliography

2025

Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data.

[BibT_eX]

[DOI]

BMC Bioinform., December, 2025

2023

Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics.

[BibT_eX]

[DOI]

Mengbo Li

Gordon K. Smyth

Bioinform., May, 2023

2017

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR.

[BibT_eX]

[DOI]

F1000Research, 2017

2016

statmod: Probability Calculations for the Inverse Gaussian Distribution.

[BibT_eX]

[DOI]

Göknur Giner

Gordon K. Smyth

R J., 2016

From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline.

[BibT_eX]

[DOI]

Yunshun Chen

Aaron T. L. Lun

Gordon K. Smyth

F1000Research, 2016

It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.

[BibT_eX]

[DOI]

Aaron T. L. Lun

Yunshun Chen

Gordon K. Smyth

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2015

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.

[BibT_eX]

[DOI]

Aaron T. L. Lun

Gordon K. Smyth

BMC Bioinform., 2015

2014

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

[BibT_eX]

[DOI]

Yang Liao

Gordon K. Smyth

Wei Shi

Bioinform., 2014

2013

Separate-channel analysis of two-channel microarrays: recovering inter-spot information.

[BibT_eX]

[DOI]

Gordon K. Smyth

Naomi S. Altman

BMC Bioinform., 2013

2010

ROAST: rotation gene set tests for complex microarray experiments.

[BibT_eX]

[DOI]

Di Wu

Elgene Lim

François Vaillant

Marie-Liesse Asselin-Labat

Jane E. Visvader

Gordon K. Smyth

Bioinform., 2010

<tt>edgeR</tt>: a Bioconductor package for differential expression analysis of digital gene expression data.

[BibT_eX]

[DOI]

Mark D. Robinson

Davis J. McCarthy

Gordon K. Smyth

Bioinform., 2010

2009

Illumina WG-6 BeadChip strips should be normalized separately.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Testing significance relative to a fold-change threshold is a TREAT.

[BibT_eX]

[DOI]

Davis J. McCarthy

Gordon K. Smyth

Bioinform., 2009

2008

Evaluation of Tweedie exponential dispersion model densities by Fourier inversion.

[BibT_eX]

[DOI]

Peter K. Dunn

Gordon K. Smyth

Stat. Comput., 2008

2007

Moderated statistical tests for assessing differences in tag abundance.

[BibT_eX]

[DOI]

Mark D. Robinson

Gordon K. Smyth

Bioinform., 2007

A comparison of background correction methods for two-colour microarrays.

[BibT_eX]

[DOI]

Bioinform., 2007

Using DNA microarrays to study gene expression in closely related species.

[BibT_eX]

[DOI]

Bioinform., 2007

2006

Empirical array quality weights in the analysis of microarray data.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

affylmGUI: a graphical user interface for linear modeling of single channel microarray data.

[BibT_eX]

[DOI]

Bioinform., 2006

2005

Series evaluation of Tweedie exponential dispersion model densities.

[BibT_eX]

[DOI]

Peter K. Dunn

Gordon K. Smyth

Stat. Comput., 2005

Use of within-array replicate spots for assessing differential expression in microarray experiments.

[BibT_eX]

[DOI]

Gordon K. Smyth

Joëlle Michaud

Hamish S. Scott

Bioinform., 2005

A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.

[BibT_eX]

[DOI]

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

Semi-parametric extended Poisson process models for count data.

[BibT_eX]

[DOI]

Heather M. Podlich

Malcolm J. Faddy

Gordon K. Smyth

Stat. Comput., 2004

limmaGUI: A graphical user interface for linear modeling of microarray data.

[BibT_eX]

[DOI]

James M. Wettenhall

Gordon K. Smyth

Bioinform., 2004

2002

An Improved Saddlepoint Approximation Based on the Negative Binomial Distribution for the General Birth Process.

[BibT_eX]

[DOI]

Gordon K. Smyth

Heather M. Podlich

Comput. Stat., 2002

2000

Employing Symmetry Constraints for Improved Frequency Estimation by Eigenanalysis Methods.

[BibT_eX]

[DOI]

Gordon K. Smyth

Technometrics, 2000

1996

Partitioned algorithms for maximum likelihood and other non-linear estimation.

[BibT_eX]

[DOI]

Gordon K. Smyth

Stat. Comput., 1996

1995

A Modified Prony Algorithm for Exponential Function Fitting.

[BibT_eX]

[DOI]

Michael R. Osborne

Gordon K. Smyth

SIAM J. Sci. Comput., 1995

1991

A Modified Prony Algorithm for Fitting Functions Defined by Difference Equations.

[BibT_eX]

[DOI]

Michael R. Osborne

Gordon K. Smyth

SIAM J. Sci. Comput., 1991

Gordon K. Smyth

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