Goksel Misirli

According to our database, Goksel Misirli authored at least 23 papers between 2010 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

libSBOLj3: a graph-based library for design and data exchange in synthetic biology.

Göksel Misirli

Bioinform., August, 2023

Synthetic biology open language (SBOL) version 3.1.0.

Lukas Buecherl, Thomas Mitchell, James Scott-Brown, Prashant Vaidyanathan, Gonzalo Vidal, Hasan Baig, Bryan Bartley, Jacob Beal, Matthew Crowther, Pedro Fontanarrosa, Thomas E. Gorochowski, Raik Grünberg, Vishwesh Kulkarni, James Alastair McLaughlin, Göksel Misirli, Ernst Oberortner, Anil Wipat, Chris J. Myers

J. Integr. Bioinform., March, 2023

2022

Modelling the fitness landscapes of a SCRaMbLEd yeast genome.

Bill Yang, Goksel Misirli, Anil Wipat, Jennifer Hallinan

Biosyst., 2022

2021

OMEX metadata specification (version 1.2).

John H. Gennari, Matthias König, Goksel Misirli, Maxwell Lewis Neal, David P. Nickerson, Dagmar Waltemath

J. Integr. Bioinform., 2021

Synthetic biology open language visual (SBOL visual) version 3.0.

Hasan Baig, Pedro Fontanarossa, James Alastair McLaughlin, James Scott-Brown, Prashant Vaidyanathan, Thomas E. Gorochowski, Goksel Misirli, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2021

Synthetic biology open language visual (SBOL Visual) version 2.3.

Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2021

2020

Synthetic biology open language (SBOL) version 3.0.0.

Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Jacob Beal, Matthew Crowther, Thomas E. Gorochowski, Raik Grünberg, Goksel Misirli, James Scott-Brown, Ernst Oberortner, Anil Wipat, Chris J. Myers

J. Integr. Bioinform., 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2020

Anomaly Detection for IoT Time-Series Data: A Survey.

Andrew A. Cook, Goksel Misirli, Zhong Fan

IEEE Internet Things J., 2020

2019

Synthetic Biology Open Language (SBOL) Version 2.3.

Curtis Madsen, Ángel Goñi-Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Chris Macklin, James Alastair McLaughlin, Xianwei Meng, Tramy Nguyen, Matthew R. Pocock, Meher Samineni, James Scott-Brown, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal, Michael Bissell, Kevin Clancy, John H. Gennari, Goksel Misirli, Chris J. Myers, Ernst Oberortner, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2019

Harmonizing semantic annotations for computational models in biology.

Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath

Briefings Bioinform., 2019

2018

Synthetic Biology Open Language (SBOL) Version 2.2.0.

Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Jacob Beal, Michael Bissell, Kiri Choi, Kevin Clancy, Raik Grünberg, Chris Macklin, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2018

Compiling Combinatorial Genetic Circuits with Semantic Inference.

William Waites, Goksel Misirli, Matteo Cavaliere, Vincent Danos, Anil Wipat

CoRR, 2018

2017

Tawny-SBOL: Using Ontologies to Design and Constrain Genetic Circuits.

Goksel Misirli, Phillip Lord

Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

2016

Synthetic Biology Open Language (SBOL) Version 2.1.0.

Jacob Beal, Robert Sidney Cox III, Raik Grünberg, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2016

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.

Goksel Misirli, Matteo Cavaliere, William Waites, Matthew R. Pocock, Curtis Madsen, Owen Gilfellon, Ricardo Honorato-Zimmer, Paolo Zuliani, Vincent Danos, Anil Wipat

Bioinform., 2016

2015

Synthetic Biology Open Language (SBOL) Version 2.0.0.

Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli, Nicholas Roehner, Ernst Oberortner, Matthew R. Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari, Chris J. Myers, Anil Wipat, Herbert M. Sauro

J. Integr. Bioinform., 2015

2014

BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species.

Goksel Misirli, Jennifer Hallinan, Richard Röttger, Jan Baumbach, Anil Wipat

J. Integr. Bioinform., 2014

Composable Modular Models for Synthetic Biology.

Goksel Misirli, Jennifer Hallinan, Anil Wipat

ACM J. Emerg. Technol. Comput. Syst., 2014

Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts.

Jennifer Hallinan, Owen Gilfellon, Goksel Misirli, Anil Wipat

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

2013

BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology.

Goksel Misirli, Anil Wipat, Joseph Mullen, Katherine James, Matthew R. Pocock, Wendy Smith, Nick Allenby, Jennifer Hallinan

J. Integr. Bioinform., 2013

2011

Model annotation for synthetic biology: automating model to nucleotide sequence conversion.

Goksel Misirli, Jennifer Hallinan, Tommy Yu, James R. Lawson, Sarala M. Wimalaratne, Mike T. Cooling, Anil Wipat

Bioinform., 2011

2010

Standard virtual biological parts: a repository of modular modeling components for synthetic biology.

Mike T. Cooling, V. Rouilly, Goksel Misirli, James R. Lawson, Tommy Yu, Jennifer Hallinan, Anil Wipat

Bioinform., 2010