Giovanni Bussi

According to our database, Giovanni Bussi authored at least 12 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2024

Molecular dynamics simulations reveal how vinculin refolds partially unfolded talin rod helices to stabilize them against mechanical force.

Vasyl V. Mykuliak, Rolle Rahikainen, Neil J. Ball, Giovanni Bussi, Benjamin T. Goult, Vesa P. Hytönen

PLoS Comput. Biol., 2024

2023

Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations.

Zhengyue Zhang, Jirí Sponer, Giovanni Bussi, Vojtech Mlýnský, Petr Sulc, Chad R. Simmons, Nicholas Stephanopoulos, Miroslav Krepl

J. Chem. Inf. Model., May, 2023

2022

Exploration, Representation, and Rationalization of the Conformational Phase Space of N-Glycans.

Isabell Louise Grothaus, Giovanni Bussi, Lucio Colombi Ciacchi

J. Chem. Inf. Model., 2022

2018

Using the Maximum Entropy Principle to Combine Simulations and Solution Experiments.

Andrea Cesari, Sabine Reißer, Giovanni Bussi

Comput., 2018

2015

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations.

Francesco Di Palma, Sandro Bottaro, Giovanni Bussi

BMC Bioinform., 2015

2014

Enhanced Sampling in Molecular Dynamics Using Metadynamics, Replica-Exchange, and Temperature-Acceleration.

Cameron Abrams, Giovanni Bussi

Entropy, 2014

PLUMED 2: New feathers for an old bird.

Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi, Carlo Camilloni, Giovanni Bussi

Comput. Phys. Commun., 2014

2013

Structural Role of Uracil DNA Glycosylase for the Recognition of Uracil in DNA Duplexes. Clues from Atomistic Simulations.

Duvan Franco, Jacopo Sgrignani, Giovanni Bussi, Alessandra Magistrato

J. Chem. Inf. Model., 2013

2009

SaX: An open source package for electronic-structure and optical-properties calculations in the GW approximation.

Layla Martin-Samos, Giovanni Bussi

Comput. Phys. Commun., 2009

PLUMED: A portable plugin for free-energy calculations with molecular dynamics.

Massimiliano Bonomi, Davide Branduardi, Giovanni Bussi, Carlo Camilloni, Davide Provasi, Paolo Raiteri, Davide Donadio, Fabrizio Marinelli, Fabio Pietrucci, Ricardo A. Broglia, Michele Parrinello

Comput. Phys. Commun., 2009

2008

Stochastic thermostats: comparison of local and global schemes.

Giovanni Bussi, Michele Parrinello

Comput. Phys. Commun., 2008

A simple asynchronous replica-exchange implementation

Giovanni Bussi

CoRR, 2008