Gilbert S. Omenn

Orcid: 0000-0002-8976-6074

According to our database1, Gilbert S. Omenn authored at least 27 papers between 2008 and 2023.

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Bibliography

2023
Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record?
J. Biomed. Informatics, March, 2023

2022
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction.
Genom. Proteom. Bioinform., October, 2022

Fast and accurate Ab Initio Protein structure prediction using deep learning potentials.
PLoS Comput. Biol., September, 2022

International electronic health record-derived post-acute sequelae profiles of COVID-19 patients.
npj Digit. Medicine, 2022

SurvMaximin: Robust federated approach to transporting survival risk prediction models.
J. Biomed. Informatics, 2022

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
J. Biomed. Semant., 2022

2021
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data.
J. Am. Medical Informatics Assoc., 2021

IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation.
Bioinform., 2021

2020
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.
npj Digit. Medicine, 2020

ClusterMine: A knowledge-integrated clustering approach based on expression profiles of gene sets.
J. Bioinform. Comput. Biol., 2020

CIDO: The Community-Based Coronavirus Infectious Disease Ontology.
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2018
Prioritizing predictive biomarkers for gene essentiality in cancer cells with mRNA expression data and DNA copy number profile.
Bioinform., 2018

2017
miRmine: a database of human miRNA expression profiles.
Bioinform., 2017

2016
A proteogenomic approach to understand splice isoform functions through sequence and expression-based computational modeling.
Briefings Bioinform., 2016

2015
Development of data representation standards by the human proteome organization proteomics standards initiative.
J. Am. Medical Informatics Assoc., 2015

MIsoMine: a genome-scale high-resolution data portal of expression, function and networks at the splice isoform level in the mouse.
Database J. Biol. Databases Curation, 2015

2014
MetDisease - connecting metabolites to diseases via literature.
Bioinform., 2014

2013
Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data.
PLoS Comput. Biol., 2013

Healthcare information technology and economics.
J. Am. Medical Informatics Assoc., 2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.
Big Data, 2013

2012
The NIH National Center for Integrative Biomedical Informatics (NCIBI).
J. Am. Medical Informatics Assoc., 2012

Metab2MeSH: annotating compounds with medical subject headings.
Bioinform., 2012

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.
Bioinform., 2012

2010
WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis.
BMC Bioinform., 2010

ConceptGen: a gene set enrichment and gene set relation mapping tool.
Bioinform., 2010

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks.
Bioinform., 2010

2008
A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.
BMC Bioinform., 2008


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