Gil Alterovitz

According to our database, Gil Alterovitz authored at least 67 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

A General-purpose AI Avatar in Healthcare.

Nicholas Yan, Gil Alterovitz

CoRR, 2024

2023

Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration.

Robert H. Dolin, Bret S. E. Heale, Gil Alterovitz, Rohan Gupta, Justin Aronson, Aziz A. Boxwala, Shaileshbhai R. Gothi, David Haines, Arthur Hermann, Tonya Hongsermeier, Ammar Husami, James Jones, Frank Naeymi-Rad, Barbara Rapchak, Chandan Ravishankar, James Shalaby, May Terry, Ning Xie, Powell Zhang, Srikar Chamala

J. Am. Medical Informatics Assoc., February, 2023

Predicting ward transfer mortality with machine learning.

José Lezama, Gil Alterovitz, Colleen E. Jakey, Ana L. Kraus, Michael J. Kim, Andrew A. Borkowski

Frontiers Artif. Intell., February, 2023

Informing the ethical review of human subjects research utilizing artificial intelligence.

Christos A. Makridis, Anthony Boese, Rafael Fricks, Don E. Workman, Molly Klote, Joshua Mueller, Isabel J. Hildebrandt, Michael Kim, Gil Alterovitz

Frontiers Comput. Sci., 2023

Transfer Learning for Mortality Prediction in Non-Small Cell Lung Cancer with Low-Resolution Histopathology Slide Snapshots.

Matthew Clark, Christopher Meyer, Jaime Ramos-Cejudo, Danne C. Elbers, Karen E. Pierce-Murray, Rafael Fricks, Gil Alterovitz, Luigi Rao, Mary T. Brophy, Nhan V. Do, Robert L. Grossman, Nathanael R. Fillmore

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022

A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources.

Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams

J. Am. Medical Informatics Assoc., 2022

2021

An explainable machine learning platform for pyrazinamide resistance prediction and genetic feature identification of Mycobacterium tuberculosis.

Andrew Zhang, Ling Teng, Gil Alterovitz

J. Am. Medical Informatics Assoc., 2021

Interoperable genetic lab test reports: mapping key data elements to HL7 FHIR specifications and professional reporting guidelines.

Aly Khalifa, Clinton C. Mason, Jennifer H. Garvin, Marc S. Williams, Guilherme Del Fiol, Brian R. Jackson, Steven B. Bleyl, Gil Alterovitz, Stanley M. Huff

J. Am. Medical Informatics Assoc., 2021

Transfer Learning Based Multi-Objective Evolutionary Algorithm for Community Detection of Dynamic Complex Networks.

Jungang Zou, Fan Lin, Beizhan Wang, Siyu Gao, Gaoshan Deng, Wenhua Zeng, Gil Alterovitz

CoRR, 2021

Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans.

Christos A. Makridis, David Y. Zhao, Cosmin Adrian Bejan, Gil Alterovitz

Comput. Biol. Medicine, 2021

vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration.

Robert H. Dolin, Shaileshbhai R. Gothi, Aziz A. Boxwala, Bret S. E. Heale, Ammar Husami, James Jones, Himanshu Khangar, Shubham Londhe, Frank Naeymi-Rad, Soujanya Rao, Barbara Rapchak, James Shalaby, Varun Suraj, Ning Xie, Srikar Chamala, Gil Alterovitz

BMC Bioinform., 2021

netAE: semi-supervised dimensionality reduction of single-cell RNA sequencing to facilitate cell labeling.

Zhengyang Dong, Gil Alterovitz

Bioinform., 2021

SARS-CoV-2 Drug Discovery based on Intrinsically Disordered Regions.

Anish Mudide, Gil Alterovitz

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic Data.

Christos A. Makridis, Anish Mudide, Gil Alterovitz

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

AI for infectious disease modelling and therapeutics.

Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

An efficient causal structure learning algorithm for linear arbitrarily distributed continuous data.

Jing Yang, Na Li, Ning An, Yu Chen, Gil Alterovitz

J. Supercomput., 2020

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.

Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen

J. Am. Medical Informatics Assoc., 2020

Digital personal health libraries: a systematic literature review.

Huitong Ding, Chi Zhang, Ning An, Lingling Zhang, Ning Xie, Gil Alterovitz

CoRR, 2020

Smoky Mountain Data Challenge 2020: An Open Call to Solve Data Problems in the Areas of Neutron Science, Material Science, Urban Modeling and Dynamics, Geophysics, and Biomedical Informatics.

Suzanne Parete-Koon, Peter F. Peterson, Garrett E. Granroth, Wenduo Zhou, Pravallika Devineni, Nouamane Laanait, Junqi Yin, Albina Y. Borisevich, Ketan Maheshwari, Melissa R. Allen-Dumas, Srinath Ravulaparthy, Kuldeep R. Kurte, Jibo Sanyal, Anne Berres, Olivera Kotevska, Folami Alamudun, Keith Gray, Max Grossman, Anar Yusifov, Ioana Danciu, Gil Alterovitz, Dasha Herrmannova

Proceedings of the Driving Scientific and Engineering Discoveries Through the Convergence of HPC, Big Data and AI, 2020

Personal Cognitive Health Library.

Lingling Zhang, Ning An, Huitong Ding, Ning Xie, Chi Zhang, Gil Alterovitz

Proceedings of the AMIA 2020, 2020

2019

Sparse online collaborative filtering with dynamic regularization.

Kangkang Li, Xiuze Zhou, Fan Lin, Wenhua Zeng, Beizhan Wang, Gil Alterovitz

Inf. Sci., 2019

Extracting causal relations from the literature with word vector mapping.

Ning An, Yongbo Xiao, Jing Yuan, Jiaoyun Yang, Gil Alterovitz

Comput. Biol. Medicine, 2019

Predicting of Associations Between MicroRNA and Human Diseases Based on Multiple Similarities and Arbitrarily-Order Proximity Network Embedding.

Xiujin Wu, Wenhua Zeng, Yuxiu Xu, Beizhan Wang, Xiangrong Liu, Fan Lin, Gil Alterovitz

IEEE Access, 2019

Deep Probabilistic Matrix Factorization Framework for Online Collaborative Filtering.

Kangkang Li, Xiuze Zhou, Fan Lin, Wenhua Zeng, Gil Alterovitz

IEEE Access, 2019

2018

Subtype dependent biomarker identification and tumor classification from gene expression profiles.

Aiguo Wang, Ning An, Guilin Chen, Li Liu, Gil Alterovitz

Knowl. Based Syst., 2018

2017

Biobrick chain recommendations for genetic circuit design.

Jiaoyun Yang, Song Yu, Bowen Gong, Ning An, Gil Alterovitz

Comput. Biol. Medicine, 2017

Wrapper-based gene selection with Markov blanket.

Aiguo Wang, Ning An, Jing Yang, Guilin Chen, Lian Li, Gil Alterovitz

Comput. Biol. Medicine, 2017

SNP by SNP by environment interaction network of alcoholism.

Amin Zollanvari, Gil Alterovitz

BMC Syst. Biol., 2017

Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization.

Jiaoyun Yang, Haipeng Wang, Huitong Ding, Ning An, Gil Alterovitz

BMC Bioinform., 2017

2016

A Partial Correlation Statistic Structure Learning Algorithm Under Linear Structural Equation Models.

Jing Yang, Ning An, Gil Alterovitz

IEEE Trans. Knowl. Data Eng., 2016

Classification of hospital acquired complications using temporal clinical information from a large electronic health record.

Jeremy L. Warner, Peijin Zhang, Jenny Liu, Gil Alterovitz

J. Biomed. Informatics, 2016

SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care.

Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz

J. Am. Medical Informatics Assoc., 2016

Gene expression prediction using low-rank matrix completion.

Arnav Kapur, Kshitij Marwah, Gil Alterovitz

BMC Bioinform., 2016

2015

Accelerating wrapper-based feature selection with K-nearest-neighbor.

Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz

Knowl. Based Syst., 2015

Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization.

Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz

J. Am. Medical Informatics Assoc., 2015

SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.

Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane

J. Am. Medical Informatics Assoc., 2015

Predicting hypertension without measurement: A non-invasive, questionnaire-based approach.

Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz

Expert Syst. Appl., 2015

Improving PLS-RFE based gene selection for microarray data classification.

Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz

Comput. Biol. Medicine, 2015

2014

Modified Anderson-Darling Test-Based Target Detector in Non-Homogenous Environments.

Yang Li, Yinsheng Wei, Bingfei Li, Gil Alterovitz

Sensors, 2014

Bayesian Prognostic Model for Genomic Discovery in Bipolar Disorder.

Swetha S. Bobba, Amin Zollanvari, Gil Alterovitz

Proceedings of the BIOINFORMATICS 2014, 2014

Incremental wrapper based gene selection with Markov blanket.

Aiguo Wang, Ning An, Guilin Chen, Jing Yang, Lian Li, Gil Alterovitz

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Accelerating incremental wrapper based gene selection with K-Nearest-Neighbor.

Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma.

Jeremy L. Warner, Gil Alterovitz, Kelly Bodio, Robin M. Joyce

J. Am. Medical Informatics Assoc., 2013

Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network.

Jeremy L. Warner, Peter C. Yang, Gil Alterovitz

Proceedings of the MEDINFO 2013, 2013

Analytic Approaches to Phenotypic Complexity.

Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz

Proceedings of the MEDINFO 2013, 2013

Causal discovery based on healthcare information.

Jing Yang, Ning An, Gil Alterovitz, Lian Li, Aiguo Wang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information.

Jeremy L. Warner, Quan Ding, David A. Kreda, Zi'ou Zheng, Keshav Gupta, Joshua C. Denny, Gil Alterovitz

Proceedings of the AMIA 2013, 2013

Sharing of Genomic Information: Perspectives from Stakeholders.

Jeremy L. Warner, Gil Alterovitz, Joshua C. Denny, Robert Fassett, Kevin S. Hughes

Proceedings of the AMIA 2013, 2013

Constructing a Novel Cancer Ontology.

Michael C. Gao, Jeremy L. Warner, Peter C. Yang, Gil Alterovitz

Proceedings of the AMIA 2013, 2013

2012

Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.

Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz

Briefings Bioinform., 2012

Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges.

Jeremy L. Warner, Gil Alterovitz

Proceedings of the AMIA 2012, 2012

2011

Is the reduction of dimensionality to a small number of features always necessary in constructing predictive models for analysis of complex diseases or behaviours?

Amin Zollanvari, Nancy L. Saccone, Laura J. Bierut, Marco Ramoni, Gil Alterovitz

Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010

Introduction to the special issue on information theory in molecular biology and neuroscience.

Olgica Milenkovic, Gil Alterovitz, Gerard Battail, Todd P. Coleman, Joachim Hagenauer, Sean P. Meyn, Nathan D. Price, Marco Ramoni, Ilya Shmulevich, Wojciech Szpankowski

IEEE Trans. Inf. Theory, 2010

Mapping transcription mechanisms from multimodal genomic data.

Hsun-Hsien Chang, Michael J. McGeachie, Gil Alterovitz, Marco Ramoni

BMC Bioinform., 2010

The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Gil Alterovitz, Taro Muso, Marco Ramoni

Briefings Bioinform., 2010

Session Introduction.

Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2009

Session Introduction.

Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, Drew Endy, Marco Ramoni

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Automated programming for bioinformatics algorithm deployment.

Gil Alterovitz, Adnaan Jiwaji, Marco Ramoni

Bioinform., 2008

System-Wide Peripheral Biomarker Discovery Using Information Theory.

Gil Alterovitz, Michael Xiang, Jonathan Liu, Amelia Chang, Marco Ramoni

Proceedings of the Biocomputing 2008, 2008

An information theoretic framework for genomic data analysis.

Aaron McKenna, Gil Alterovitz

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007

Erratum to "Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach".

Gil Alterovitz, Marco Ramoni

IEEE Trans. Educ., 2007

Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach.

Gil Alterovitz, Marco Ramoni

IEEE Trans. Educ., 2007

GO PaD: the Gene Ontology Partition Database.

Gil Alterovitz, Michael Xiang, Mamta Mohan, Marco Ramoni

Nucleic Acids Res., 2007

A Systematic Approach to Quantifying Evolutionary Functional Trends Across the Universal Tree of Life.

Gil Alterovitz, Taro Muso, Paresh Malalur, Marco Ramoni

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Linking Protein Mass with Function via Organismal Massome Networks.

Gil Alterovitz, Eugenia Lyashenko, Michael Xiang, Marco Ramoni

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Gene Lethality Detection and Characterization via Topological Analysis of Regulatory Networks.

Gil Alterovitz, Vinayak Muralidhar, Marco Ramoni

IEEE Trans. Circuits Syst. I Regul. Pap., 2006

Discovering Biological Guilds through Topological Abstraction.

Gil Alterovitz, Marco Ramoni

Proceedings of the AMIA 2006, 2006