Ghassan Hamarneh

Orcid: 0000-0001-5040-7448

Affiliations:
  • Simon Fraser University, Burnaby, Canada


According to our database1, Ghassan Hamarneh authored at least 271 papers between 2000 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
Multi-sample ζ-mixup: richer, more realistic synthetic samples from a p-series interpolant.
J. Big Data, December, 2024

GC<sup>2</sup>: Generalizable Continual Classification of Medical Images.
IEEE Trans. Medical Imaging, November, 2024

DermSynth3D: Synthesis of in-the-wild annotated dermatology images.
Medical Image Anal., 2024

Debiasify: Self-Distillation for Unsupervised Bias Mitigation.
CoRR, 2024

SMITE: Segment Me In TimE.
CoRR, 2024

Lesion Elevation Prediction from Skin Images Improves Diagnosis.
CoRR, 2024

Segmentation Style Discovery: Application to Skin Lesion Images.
CoRR, 2024

Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields.
CoRR, 2024

Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets.
CoRR, 2024

Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging.
Comput. Biol. Medicine, 2024

Evaluating the clinical utility of artificial intelligence assistance and its explanation on the glioma grading task.
Artif. Intell. Medicine, 2024

TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

BiasPruner: Debiased Continual Learning for Medical Image Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

SLiMe: Segment Like Me.
Proceedings of the Twelfth International Conference on Learning Representations, 2024

AFreeCA: Annotation-Free Counting for All.
Proceedings of the Computer Vision - ECCV 2024, 2024

Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2023
A survey on deep learning for skin lesion segmentation.
Medical Image Anal., August, 2023

Plain-to-clear speech video conversion for enhanced intelligibility.
Int. J. Speech Technol., March, 2023


Guidelines and evaluation of clinical explainable AI in medical image analysis.
Medical Image Anal., 2023

Mouth2Audio: intelligible audio synthesis from videos with distinctive vowel articulation.
Int. J. Speech Technol., 2023

SYRAC: Synthesize, Rank, and Count.
CoRR, 2023

AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth.
CoRR, 2023

Rethinking AI Explainability and Plausibility.
CoRR, 2023

Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals.
CoRR, 2023

Image denoising in the deep learning era.
Artif. Intell. Rev., 2023

AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

Learning-to-Count by Learning-to-Rank.
Proceedings of the 20th Conference on Robots and Vision, 2023

2022
Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography.
IEEE Trans. Medical Imaging, 2022

DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning.
IEEE Trans. Medical Imaging, 2022

Skin3D: Detection and longitudinal tracking of pigmented skin lesions in 3D total-body textured meshes.
Medical Image Anal., 2022

Transcending XAI Algorithm Boundaries through End-User-Inspired Design.
CoRR, 2022

Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features.
Comput. Methods Programs Biomed., 2022

Active deep learning from a noisy teacher for semi-supervised 3D image segmentation: Application to COVID-19 pneumonia infection in CT.
Comput. Medical Imaging Graph., 2022

MaskTune: Mitigating Spurious Correlations by Forcing to Explore.
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

Deep Multimodal Guidance for Medical Image Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions.
Proceedings of the Computer Vision - ECCV 2022 Workshops, 2022

FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning.
Proceedings of the Computer Vision - ECCV 2022 Workshops, 2022

BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements?
Proceedings of the Thirty-Sixth AAAI Conference on Artificial Intelligence, 2022

2021
Cascaded Regression Neural Nets for Kidney Localization and Segmentation-free Volume Estimation.
IEEE Trans. Medical Imaging, 2021

One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images.
CoRR, 2021

DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning.
CoRR, 2021

Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Skin Textured Meshes.
CoRR, 2021

EUCA: A Practical Prototyping Framework towards End-User-Centered Explainable Artificial Intelligence.
CoRR, 2021

Learnable image histograms-based deep radiomics for renal cell carcinoma grading and staging.
Comput. Medical Imaging Graph., 2021

Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images.
Comput. Biol. Medicine, 2021

Deep learning for biomedical image reconstruction: a survey.
Artif. Intell. Rev., 2021

Deep semantic segmentation of natural and medical images: a review.
Artif. Intell. Rev., 2021

Culprit-Prune-Net: Efficient Continual Sequential Multi-domain Learning with Application to Skin Lesion Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Matthews Correlation Coefficient Loss For Deep Convolutional Networks: Application To Skin Lesion Segmentation.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

D-LEMA: Deep Learning Ensembles From Multiple Annotations - Application to Skin Lesion Segmentation.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2021

AECNN: Adversarial and Enhanced Convolutional Neural Networks.
Proceedings of the Computer-Aided Analysis of Gastrointestinal Videos, 2021

2020
Missing MRI Pulse Sequence Synthesis Using Multi-Modal Generative Adversarial Network.
IEEE Trans. Medical Imaging, 2020

ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy.
IEEE Trans. Medical Imaging, 2020

A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods.
Patterns, 2020

Patch-Based Non-local Bayesian Networks for Blind Confocal Microscopy Denoising.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images.
Proceedings of the 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2020

2019
Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features.
IEEE J. Biomed. Health Informatics, 2019

Seven-Point Checklist and Skin Lesion Classification Using Multitask Multimodal Neural Nets.
IEEE J. Biomed. Health Informatics, 2019

Computer-vision analysis reveals facial movements made during Mandarin tone production align with pitch trajectories.
Speech Commun., 2019

Applying Artificial Intelligence to Glioma Imaging: Advances and Challenges.
CoRR, 2019

Signed Input Regularization.
CoRR, 2019

Deep Learning Models for Digital Pathology.
CoRR, 2019

Visual Diagnosis of Dermatological Disorders: Human and Machine Performance.
CoRR, 2019

Special issue on machine learning in medical imaging.
Comput. Medical Imaging Graph., 2019

Combo loss: Handling input and output imbalance in multi-organ segmentation.
Comput. Medical Imaging Graph., 2019

Predictive connectome subnetwork extraction with anatomical and connectivity priors.
Comput. Medical Imaging Graph., 2019

Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data.
Bioinform., 2019

Weakly supervised fully convolutional network for PET lesion segmentation.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Limited-Angle Diffuse Optical Tomography Image Reconstruction Using Deep Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

InfoMask: Masked Variational Latent Representation to Localize Chest Disease.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Select, Attend, and Transfer: Light, Learnable Skip Connections.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

Improved Inference via Deep Input Transfer.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Learning to Segment Skin Lesions from Noisy Annotations.
Proceedings of the Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data, 2019

Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy.
Proceedings of the Machine Learning for Medical Image Reconstruction, 2019

Renal Cell Carcinoma Staging with Learnable Image Histogram-Based Deep Neural Network.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2019

Melanoma Recognition via Visual Attention.
Proceedings of the Information Processing in Medical Imaging, 2019

Retinal Image Classification via Vasculature-Guided Sequential Attention.
Proceedings of the 2019 IEEE/CVF International Conference on Computer Vision Workshops, 2019

WhiteNNer-Blind Image Denoising via Noise Whiteness Priors.
Proceedings of the 2019 IEEE/CVF International Conference on Computer Vision Workshops, 2019

A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2019

2018
Adversarial Stain Transfer for Histopathology Image Analysis.
IEEE Trans. Medical Imaging, 2018

Segmentation and Measurement of Chronic Wounds for Bioprinting.
IEEE J. Biomed. Health Informatics, 2018

Select, Attend, and Transfer: Light, Learnable Skip Connections.
CoRR, 2018

Segmentation-free direct tumor volume and metabolic activity estimation from PET scans.
Comput. Medical Imaging Graph., 2018

Automatic localization of normal active organs in 3D PET scans.
Comput. Medical Imaging Graph., 2018

TreeNet: Multi-loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Deep Learning Based Image Reconstruction for Diffuse Optical Tomography.
Proceedings of the Machine Learning for Medical Image Reconstruction, 2018

Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks.
Proceedings of the Understanding and Interpreting Machine Learning in Medical Image Computing Applications, 2018

Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements?
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Noninvasive Determination of Gene Mutations in Clear Cell Renal Cell Carcinoma Using Multiple Instance Decisions Aggregated CNN.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Deep auto-context fully convolutional neural network for skin lesion segmentation.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Generative adversarial networks to segment skin lesions.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Connectome priors in deep neural networks to predict autism.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Joint Gender-, Tone-, Vowel- Classification Via Novel Hierarchical Classification for Annotation of Monosyllabic Mandarin Word Tokens.
Proceedings of the 2018 IEEE International Conference on Acoustics, 2018

2017
Evaluation of Three Algorithms for the Segmentation of Overlapping Cervical Cells.
IEEE J. Biomed. Health Informatics, 2017

Geometry-Based Pectoral Muscle Segmentation From MLO Mammogram Views.
IEEE Trans. Biomed. Eng., 2017

BrainNetCNN: Convolutional neural networks for brain networks; towards predicting neurodevelopment.
NeuroImage, 2017

A structured latent model for ovarian carcinoma subtyping from histopathology slides.
Medical Image Anal., 2017

Modelling and extraction of pulsatile radial distension and compression motion for automatic vessel segmentation from video.
Medical Image Anal., 2017

Fully Convolutional Networks to Detect Clinical Dermoscopic Features.
CoRR, 2017

Pareto-optimal multi-objective dimensionality reduction deep auto-encoder for mammography classification.
Comput. Methods Programs Biomed., 2017

Globally-Optimal Anatomical Tree Extraction from 3D Medical Images Using Pictorial Structures and Minimal Paths.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Graph Geodesics to Find Progressively Similar Skin Lesion Images.
Proceedings of the Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics, 2017

Collage CNN for Renal Cell Carcinoma Detection from CT.
Proceedings of the Machine Learning in Medical Imaging - 8th International Workshop, 2017

Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

SwifTree: Interactive Extraction of 3D Trees Supporting Gaming and Crowdsourcing.
Proceedings of the Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, 2017

Prediction of Brain Network Age and Factors of Delayed Maturation in Very Preterm Infants.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Uncertainty Driven Multi-loss Fully Convolutional Networks for Histopathology.
Proceedings of the Intravascular Imaging and Computer Assisted Stenting, and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, 2017

Leveraging Tree Statistics for Extracting Anatomical Trees from 3D Medical Images.
Proceedings of the 14th Conference on Computer and Robot Vision, 2017

Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates.
Proceedings of the 14th Conference on Computer and Robot Vision, 2017

2016
Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery.
IEEE Trans. Medical Imaging, 2016

STEAM - Statistical Template Estimation for Abnormality Mapping: A personalized DTI analysis technique with applications to the screening of preterm infants.
NeuroImage, 2016

Skin lesion tracking using structured graphical models.
Medical Image Anal., 2016

Incorporating prior knowledge in medical image segmentation: a survey.
CoRR, 2016

Machine Learning on Human Connectome Data from MRI.
CoRR, 2016

Adaptable Precomputation for Random Walker Image Segmentation and Registration.
CoRR, 2016

Endoscopic scene labelling and augmentation using intraoperative pulsatile motion and colour appearance cues with preoperative anatomical priors.
Int. J. Comput. Assist. Radiol. Surg., 2016

Multi-resolution-Tract CNN with Hybrid Pretrained and Skin-Lesion Trained Layers.
Proceedings of the Machine Learning in Medical Imaging - 7th International Workshop, 2016

Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests.
Proceedings of the Machine Learning in Medical Imaging - 7th International Workshop, 2016

Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Topology Aware Fully Convolutional Networks for Histology Gland Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Tumor Lesion Segmentation from 3D PET Using a Machine Learning Driven Active Surface.
Proceedings of the Machine Learning in Medical Imaging - 7th International Workshop, 2016

Enhancing accuracy of symmetric random walker image registration via a novel data-consistency measure.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Deep features to classify skin lesions.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Multi-loss convolutional networks for gland analysis in microscopy.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Sub-Cellular Network Analysis of Ryanodine Receptor Positioning in Control and Phosphorylated States.
Proceedings of the Computing in Cardiology, CinC 2016, Vancouver, 2016

2015
Evaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge.
IEEE Trans. Medical Imaging, 2015

The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation.
IEEE Trans. Medical Imaging, 2015

Examining visible articulatory features in clear and plain speech.
Speech Commun., 2015

Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video.
Medical Image Anal., 2015

Multi-Region Probabilistic Dice Similarity Coefficient using the Aitchison Distance and Bipartite Graph Matching.
CoRR, 2015

Corpus Callosum Segmentation in MS Studies Using Normal Atlases and Optimal Hybridization of Extrinsic and Intrinsic Image Cues.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Prediction of Motor Function in Very Preterm Infants Using Connectome Features and Local Synthetic Instances.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Automatic Diagnosis of Ovarian Carcinomas via Sparse Multiresolution Tissue Representation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Automatic Vessel Segmentation from Pulsatile Radial Distension.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Random walker image registration with inverse consistency.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Segmentation of overlapping cervical cells: A variational method with star-shape prior.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Skin lesion matching using Jacobian based descriptors for topology preservation.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Examining visible articulatory features in clear and conversational speech.
Proceedings of the 18th International Congress of Phonetic Sciences, 2015

2014
Local Optimization Based Segmentation of Spatially-Recurring, Multi-Region Objects With Part Configuration Constraints.
IEEE Trans. Medical Imaging, 2014

The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation.
IEEE Trans. Medical Imaging, 2014

Spatial Normalization of Human Back Images for Dermatological Studies.
IEEE J. Biomed. Health Informatics, 2014

Hair Enhancement in Dermoscopic Images Using Dual-Channel Quaternion Tubularness Filters and MRF-Based Multilabel Optimization.
IEEE Trans. Image Process., 2014

Arterial Mechanical Motion Estimation Based on a Semi-Rigid Body Deformation Approach.
Sensors, 2014

Structural network analysis of brain development in young preterm neonates.
NeuroImage, 2014

Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Topology Preservation and Anatomical Feasibility in Random Walker Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Bifurcation detection in 3D vascular images using novel features and random forest.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Random walker image registration with cost aggregation.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Biomechanical kidney model for predicting tumor displacement in the presence of external pressure load.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

DTI-DeformIt: Generating ground-truth validation data for diffusion tensor image analysis tasks.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Fast random walker image registration using precomputation.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
Bilateral Maps for Partial Matching.
Comput. Graph. Forum, 2013

Random Walks with Efficient Search and Contextually Adapted Image Similarity for Deformable Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Segmentation of Cells with Partial Occlusion and Part Configuration Constraint Using Evolutionary Computation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT.
Proceedings of the Machine Learning in Medical Imaging - 4th International Workshop, 2013

Improving Probabilistic Image Registration via Reinforcement Learning and Uncertainty Evaluation.
Proceedings of the Machine Learning in Medical Imaging - 4th International Workshop, 2013

Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation.
Proceedings of the Machine Learning in Medical Imaging - 4th International Workshop, 2013

Uncertainty in Tractography via Tract Confidence Regions.
Proceedings of the Computational Diffusion MRI and Brain Connectivity, 2013

A Cross-Sectional Piecewise Constant Model for Segmenting Highly Curved Fiber Tracts in Diffusion MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery.
Proceedings of the Abdominal Imaging. Computation and Clinical Applications, 2013

Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study.
Proceedings of the Augmented Reality Environments for Medical Imaging and Computer-Assisted Interventions, 2013

Globally optimal spinal cord segmentation using a minimal path in high dimensions.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

K-confidence: Assessing uncertainty in tractography using K optimal paths.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Bounded Labeling Function for Global Segmentation of Multi-part Objects with Geometric Constraints.
Proceedings of the IEEE International Conference on Computer Vision, 2013

2012
Modeling Brain Activation in fMRI Using Group MRF.
IEEE Trans. Medical Imaging, 2012

Medial-Based Deformable Models in Nonconvex Shape-Spaces for Medical Image Segmentation.
IEEE Trans. Medical Imaging, 2012

Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves.
Medical Image Anal., 2012

Mammography segmentation with maximum likelihood active contours.
Medical Image Anal., 2012

Spatial dispersion of lesions as a surrogate biomarker for disability in multiple sclerosis.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Iterative segmentation and motion correction for dynamic PET images based on radioactive tracer kinetics.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Learning features for streak detection in dermoscopic color images using localized radial flux of principal intensity curvature.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Multi-region competitive tractography via graph-based random walks.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Vascular bifurcation detection in scale-space.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Uncertainty-Based Feature Learning for Skin Lesion Matching Using a High Order MRF Optimization Framework.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Locally-adaptive similarity metric for deformable medical image registration.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Diffusion tensor image processing using biquaternions.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach.
IEEE Trans. Medical Imaging, 2011

Perception-Based Visualization of Manifold-Valued Medical Images Using Distance-Preserving Dimensionality Reduction.
IEEE Trans. Medical Imaging, 2011

VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds.
Comput. Graph. Forum, 2011

A Survey on Shape Correspondence.
Comput. Graph. Forum, 2011

Prior Knowledge for Part Correspondence.
Comput. Graph. Forum, 2011

Active Learning for Interactive 3D Image Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

A Machine Learning Approach to Tongue Motion Analysis in 2D Ultrasound Image Sequences.
Proceedings of the Machine Learning in Medical Imaging - Second International Workshop, 2011

Detecting Structure in Diffusion Tensor MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Probabilistic Multi-shape Segmentation of Knee Extensor and Flexor Muscles.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Exact integration of diffusion orientation distribution functions for graph-based diffusion MRI analysis.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Convex multi-region probabilistic segmentation with shape prior in the isometric log-ratio transformation space.
Proceedings of the IEEE International Conference on Computer Vision, 2011

Spinal Cord Segmentation for Volume Estimation in Healthy and Multiple Sclerosis Subjects Using Crawlers and Minimal Paths.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

Consistent Information Content Estimation for Diffusion Tensor MR Images.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial-based Shape Deformation.
Proceedings of the Genetic and Evolutionary Computation: Medical Applications, 2011

2010
Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information.
IEEE Trans. Vis. Comput. Graph., 2010

The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning.
IEEE Trans. Pattern Anal. Mach. Intell., 2010

Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies.
J. Digit. Imaging, 2010

VascuSynth: Simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis.
Comput. Medical Imaging Graph., 2010

ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation.
Comput. Graph. Forum, 2010

Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration.
Proceedings of the Biomedical Image Registration, 4th International Workshop, 2010

Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2010

Generalized Sparse Classifiers for Decoding Cognitive States in fMRI.
Proceedings of the Machine Learning in Medical Imaging, First International Workshop, 2010

Detecting Brain Activation in fMRI Using Group Random Walker.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Probabilistic Multi-Shape Representation Using an Isometric Log-Ratio Mapping.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Fast Random Walker with Priors Using Precomputation for Interactive Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

A New Preprocessing Filter for Digital Mammograms.
Proceedings of the Image and Signal Processing, 4th International Conference, 2010

Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues.
Proceedings of the Computer Vision, 2010

Graph-based tracking of the tongue contour in ultrasound sequences with adaptive temporal regularization.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2010

Group MRF for fMRI activation detection.
Proceedings of the Twenty-Third IEEE Conference on Computer Vision and Pattern Recognition, 2010

Vessel scale-selection using MRF optimization.
Proceedings of the Twenty-Third IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009
n -SIFT: n -Dimensional Scale Invariant Feature Transform.
IEEE Trans. Image Process., 2009

Watershed segmentation using prior shape and appearance knowledge.
Image Vis. Comput., 2009

Multi-Label MRF Optimization via Least Squares s-t Cuts
CoRR, 2009

Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation
CoRR, 2009

Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Hands-free interactive image segmentation using eyegaze.
Proceedings of the Medical Imaging 2009: Computer-Aided Diagnosis, 2009

Adaptive Contextual Energy Parameterization for Automated Image Segmentation.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

Optimal Weights for Convex Functionals in Medical Image Segmentation.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

Multi-label MRF Optimization via a Least Squares <i>s</i> - <i>t</i> Cut.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

A graph-based approach to skin mole matching incorporating template-normalized coordinates.
Proceedings of the 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2009), 2009

2008
3D Bicipital Groove Shape Analysis and Relationship to Tendopathy.
J. Digit. Imaging, 2008

Development of NEMA-based Software for Gamma Camera Quality Control.
J. Digit. Imaging, 2008

Validation of mutual information-based registration of CT and bone SPECT images in dual-isotope studies.
Comput. Methods Programs Biomed., 2008

Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology.
Comput. Medical Imaging Graph., 2008

Kinetic Modeling Based Probabilistic Segmentation for Molecular Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Simulation of Ground-Truth Validation Data Via Physically- and Statistically-Based Warps.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Quaternion Color Curvature.
Proceedings of the 16th Color and Imaging Conference, 2008

SMRFI: Shape matching via registration of vector-valued feature images.
Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

2007
Bilateral Filtering of Diffusion Tensor Magnetic Resonance Images.
IEEE Trans. Image Process., 2007

Contour Correspondence via Ant Colony Optimization.
Proceedings of the 15th Pacific Conference on Computer Graphics and Applications, 2007

DT-MRI segmentation using graph cuts.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

3D surface parameterization using manifold learning for medial shape representation.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Segmentation of complex objects with non-spherical topologies from volumetric medical images using 3D livewire.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Tensor dissimilarity based adaptive seeding algorithm for DT-MRI visualization with streamtubes.
Proceedings of the Medical Imaging 2007: Visualization and Image-Guided Procedures, 2007

Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Quantification and Visualization of Localized and Intuitive Shape Variability Using a Novel Medial-Based Shape Representation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

N-Sift: N-Dimensional Scale Invariant Feature Transform for Matching Medical Images.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Visualizing Diffusion Tensor Dissimilarity using an ICA Based Perceptual Colour Metric.
Proceedings of the 15th Color and Imaging Conference, 2007

Visualization and exploration of time-varying medical image data sets.
Proceedings of the Graphics Interface 2007 Conference, May 28-30, 2007, Montreal, Canada, 2007

2006
MATLAB-ITK interface for medical image filtering, segmentation, and registration.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis.
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006

2005
3D live-wire-based semi-automatic segmentation of medical images.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Physics-based deformable organisms for medical image analysis.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Color lesion boundary detection using live wire.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Modeling Prior Shape and Appearance Knowledge in Watershed Segmentat.
Proceedings of the Second Canadian Conference on Computer and Robot Vision (CRV 2005), 2005

2004
Deformable spatio-temporal shape models: extending active shape models to 2D+time.
Image Vis. Comput., 2004

Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation.
Int. J. Shape Model., 2004

2003
Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames.
J. Math. Imaging Vis., 2003

Anatomically Guided Registration of Whole Body Mouse MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Physics-based shape deformations for medical image analysis.
Proceedings of the Image Processing: Algorithms and Systems II, 2003

2002
Deformable organisms for automatic medical image analysis.
Medical Image Anal., 2002

2001
Towards Intelligent Deformable Models for Medical Image Analysis.
PhD thesis, 2001

Deformable Organisms for Automatic Medical Image Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time.
Proceedings of the British Machine Vision Conference 2001, 2001

2000
Statistically constrained snake deformations.
Proceedings of the IEEE International Conference on Systems, 2000

Active contour models: application to oral lesion detection in color images.
Proceedings of the IEEE International Conference on Systems, 2000


  Loading...